XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTG
ATTTCTCTGATGTTGTGGAGGGATTCCGGTTTAAGAGACTGCTTCGGCCA
AACAATACATACATTTCCAAGATTCAGCTCATGGTCCTGGAATTGTAGAG
TTTGTGTTTTTTACCCATTATAATTCCATTATCACTAACAGAGGTGTCTC
AGGGACTCAGTTCTCTAAACCCTCACCCTCATATTTTCTTTATCAGCCTC
CTTTTCTTCAACAGCCTGGTTTACCTTCCAAGTTTCAGCTACAGCTACTC
AGATGATAAACTTCAGCTGGTTTGATCTACTTATTTTCCATTTGTTCCTC
AGCCTGCCCCCTTCCTCATCTGTGTCTCAGGAGGATGGATTGGACGGGTC
TGCCTGATGGCTTCTCTTAACCCCTGGCATTTTGCTGCGTGTGGCCAACA
GGAGCTTACAGGAAAGGTGAGAAGAAAATGAAGTTAGCATGTTTCTTCCA
ATCTCTGTCAACTAAAGGCCCCTGGTAAGTGGTATATTCTAGGGGTGCCC
ATTTCCCTGGGTTCTGTAACACGCCCTCTCCTTGTCCCTTCAGGCACAGG
AGTAGAAATGCTCTCCAGAGTTAGGTTCACGGTGCTGTACTGCTTCTAGC
TGTCTGCCTCAAAGCCTGAAGAAGGCTTATTAATGTTTCCTTTATTAAAA
TTTCTTGCCTTGCTCGG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTATCAACTCTATCACATGGC
TTTCTTAGGAAGATGCCATCCGGTCATCCGGACCCAGACCATGGGCTCTG
GGGATTTGTATTTGAGTCCCCCCTTTCTCTTCTTCCCCTTCTCTCTTCGA
TCCTCCTTCTCTCTGTGTCTGTCTTCCTCCTTTCTTTCTTCCCTTCCCTC
CTTTTTTGTGTCTTTGTCTGTCTGTCTCTGTGTGTCTATCTCTCTTTCTG
TGTGTGTATGTGTGTGTGTTTATGTGGTTGTATGCCTGTTTGCCTCTGTG
TGTGTGTGTCTGTGTCTGTCTGTCTTTCTGTCTGGTCCCCTCCCTTCCTT
CTTTCCTCATTTTCTCGATTTCCCTCCCTCTCCCTTTCTCCCTCCCTACC
TCTCTCCTTCCCTCCCTACCTCTCTCCTTCCCTTCCTCCTCTTTTCTTTC
TCCTTCTCTGTGTGGTTGCCTGCCTGTCCTCTGTGTGTCTGGTCTCTCTC
TCTGCGTTTTGGCGTGTCTCCTTTTTCTCTGTTCTGGTTTCCGCCATGTG
GTTTCTTTCCTTTTTTGTTTTTGTTTTTTTTCATTTTTTTCTTTTTTTTT
AAAGGAATACATACCACTTTACCTTCCATCTCCTAATGTACTTTTCCTCG
CGGTTTTTTATTTTTTTTTCAAATTTGTTTGAATTTTTTGTATTGTTT

Query= MSMg01no345_e01.b1 MSMg01no345_e01.b1 CHROMAT_FILE:
MSMg01no345_e01.b1 PHD_FILE: MSMg01no345_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:40 2005
         (613 letters)



>mm_chr11_43999288_44000301
          Length = 1014

 Score = 1120 bits (579), Expect = 0.0
 Identities = 600/607 (98%), Gaps = 3/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctcttga-tttctctgatgttgtggagggattccggtttaagagactgcttcggccaaa 67
           |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctcttgacttt-tctgatgttgcggagggattccggtttaagagactgcttcggccaaa 267

                                                                       
Query: 68  caatacatacatttccaagattcagctcatggtcctggaattgtagagtttgtg-ttttt 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 268 caatacatacatttccaagattcagctcatggtcctggaattgtagagtttgtgtttttt 327

                                                                       
Query: 127 tacccattataattccattatcactaacagaggtgtctcagggactcagttctctaaacc 186
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 328 tacccattataattccattatcgctaacagaggtgtctcagggactcagttctctaaacc 387

                                                                       
Query: 187 ctcaccctcatattttctttatcagcctccttttcttcaacagcctggtttaccttccaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctcaccctcatattttctttatcagcctccttttcttcaacagcctggtttaccttccaa 447

                                                                       
Query: 247 gtttcagctacagctactcagatgataaacttcagctggtttgatctacttattttccat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtttcagctacagctactcagatgataaacttcagctggtttgatctacttattttccat 507

                                                                       
Query: 307 ttgttcctcagcctgcccccttcctcatctgtgtctcaggaggatggattggacgggtct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttgttcctcagcctgcccccttcctcatctgtgtctcaggaggatggattggacgggtct 567

                                                                       
Query: 367 gcctgatggcttctcttaacccctggcattttgctgcgtgtggccaacaggagcttacag 426
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggctgatggcttctcttaacccctggcattttgctgcgtgtggccaacaggagcttacag 627

                                                                       
Query: 427 gaaaggtgagaagaaaatgaagttagcatgtttcttccaatctctgtcaactaaaggccc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaaaggtgagaagaaaatgaagttagcatgtttcttccaatctctgtcaactaaaggccc 687

                                                                       
Query: 487 ctggtaagtggtatattctaggggtgcccatttccctgggttctgtaacacgccctctcc 546
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 688 ctggtaagtggtatattctaggggtgcccatttccctgggttctgtaacatgccctctcc 747

                                                                       
Query: 547 ttgtcccttcaggcacaggagtagaaatgctctccagagttaggttcacggtgctgtact 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttgtcccttcaggcacaggagtagaaatgctctccagagttaggttcacggtgctgtact 807

                  
Query: 607 gcttcta 613
           |||||||
Sbjct: 808 gcttcta 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space:   605412
Effective search space used:   605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)