XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCA
TTTACATGATGTGCCAGAGTGAGGTTATACCGAGTAGGGCCAACCTTCTC
CTCTTCCGAGGAGAAGAGGAGGGCATGGAGGAAGTGCTCTGTGCAGGGGA
GACTGGGAGGAAAAGGGGACCAGATATTTGGATGTAAGGTGAACACAAAT
TTAATTGAAAAATGATGTATTAACCAAAAAATTGCATGTTGTATCTATGT
GTTTATGTTTATATTACCTTTCCATCCATTTAGCCATCATCCATCTACCC
ATCTAATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCCATATATCTATCCATCCATCCATCCATCCATCCATC
CATCCATCCATCCATCCATCCATCCATCCATCCATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TATCTATCATCAACTTGTCAGAAAGGAAAATATCTTAAGGAGTCATTTCA
CCTGCCTGATAACTGCCTTTTCTCCATGAAACCTCATATATATAGAAGCG
ACCCCCGTGTTTCTTAATGGCTTACACCATATTTAATTTCATAACAGGAA
TCATAGCTGTGTGAAAAATGAATGGTCCTCCATTACTCTGATATGCCCGA
AAATATTTACTTTATTTAGCACT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTACAACATGAGGCAAGAGGTGGGAGTGTGTGT
GTGTGTATGTGTGTGTTTTACCCATTTGAAAAATTAAACAAATTCAGGGA
GGTTGACAAGGATTCAATGACTTTTCCCAGAATCAACACACAGCTGGCAG
GGGACAATTTCACATGAAAGCTTGGTGTGGGATGTTATTTCTTCTGCACT
CTATAGATAAGGCCTCATGCAGTTCTTGGGTGTGTGTGTGTAATAATAGG
ATTGATTTTTAAGAACATGGAATTGGATGCTAGGCTGCTGTTCATCTTAG
GATGAAGACTGGAGAAGACCTTGTTTTCCCTACTATAAATATTTATACTG
CTTTAAGACTAGTTGGAGTTCTTGTATTAATGGGAGCAGAACATATATAC
CTATTGAGATGGTATATCAATAACATAGGGCCATATAAAAATAATGTATT
CTTGTAAACCAATACCAAATAATCAAACATAAGAAAGAAATTGAAATAAA
TAAGCAAAAATTCAACATCCTCAAATCCACCATGTTTATTTTATAACATT
AGATGCCCTTGTAGAGCAAGTGCAGTTCTGGCACAGTAGTTAATGATCTG
CCAGGTTTCTTGTTAGAGTGCTCATTTTCCAGCGCATTCTATGGACATCA
GTCTATTAGAGGAAGTGAATTCGGCCACC

Query= MSMg01no346_a11.g1 MSMg01no346_a11.g1 CHROMAT_FILE:
MSMg01no346_a11.g1 PHD_FILE: MSMg01no346_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:36 2005
         (566 letters)



>mm_chr11_93348461_93349426
          Length = 966

 Score = 1031 bits (533), Expect = 0.0
 Identities = 555/563 (98%), Gaps = 2/563 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aacatgaggcaagaggtggga--gtgtgtgtgtgtgtatgtgtgtgttttacccatttga 63
           |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||
Sbjct: 813 aacatgaggcaagaggtgggagtgtgtgtgtgtgtgtatgtttgtgttttacccatttga 754

                                                                       
Query: 64  aaaattaaacaaattcagggaggttgacaaggattcaatgacttttcccagaatcaacac 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aaaattaaacaaattcagagaggttgacaaggattcaatgacttttcccagaatcaacac 694

                                                                       
Query: 124 acagctggcaggggacaatttcacatgaaagcttggtgtgggatgttatttcttctgcac 183
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 693 acagctggcaggggacaatttcacatgaaagcttgttgtgggatgttatttcttctgcac 634

                                                                       
Query: 184 tctatagataaggcctcatgcagttcttgggtgtgtgtgtgtaataataggattgatttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tctatagataaggcctcatgcagttcttgggtgtgtgtgtgtaataataggattgatttt 574

                                                                       
Query: 244 taagaacatggaattggatgctaggctgctgttcatcttaggatgaagactggagaagac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 taagaacatggaattggatgctaggctgctgttcatcttaggatgaagactggagaagac 514

                                                                       
Query: 304 cttgttttccctactataaatatttatactgctttaagactagttggagttcttgtatta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cttgttttccctactataaatatttatactgctttaagactagttggagttcttgtatta 454

                                                                       
Query: 364 atgggagcagaacatatatacctattgagatggtatatcaataacatagggccatataaa 423
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atggaagcagaacatatatacctattgagatggtatatcaataacatagggccatataaa 394

                                                                       
Query: 424 aataatgtattcttgtaaaccaataccaaataatcaaacataagaaagaaattgaaataa 483
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aataatgtactcttgtaaaccaataccaaataatcaaacataagaaagaaattgaaataa 334

                                                                       
Query: 484 ataagcaaaaattcaacatcctcaaatccaccatgtttattttataacattagatgccct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ataagcaaaaattcaacatcctcaaatccaccatgtttattttataacattagatgccct 274

                                  
Query: 544 tgtagagcaagtgcagttctggc 566
           ||||||||||||| |||||||||
Sbjct: 273 tgtagagcaagtgtagttctggc 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)