BAC Information

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BAC

Clone NameMSMg01-346I10
Chromosome11 (Build37)
Map Location 37,964,042 - 38,139,827
singlet/doubletdoublet
Overlap geneLOC276941
Upstream geneLOC100039148
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346I10.T7 (MSMg01no346_i10.b1)MSMg01-346I10.TJ (MSMg01no346_i10.g1)
ACCAG459090AG459091
length764754
length of high quality
(start - end)		416 (64 - 479)478 (68 - 545)
definitionCHROMAT_FILE: MSMg01no346_i10.b1 PHD_FILE: MSMg01no346_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:14 2005CHROMAT_FILE: MSMg01no346_i10.g1 PHD_FILE: MSMg01no346_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,964,042 - 37,964,457)(38,139,361 - 38,139,827)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
GTGTCCTGAGAACAAGGACTATGCTTTCAACACATGTACTAGGTATTCAA
TATGTGTCTGCTGAGTATAAACAAATGACATAATGATTCAAACTGAGAAC
ATGAAACTGGAAGGTAAGCAAGAAACTTACTTCCTGAATGGAAAGCTAAT
TGTGAAGATGTCTCTAATGTGCAAAGTATTGTGACTGGGGAGCTTAGATA
AGAAATGTGGAGAATACTGAAAACCAACACAAGAGACAAAGACAAAACCC
TGATTCTGGTTGGAAGGTCTGGAGTAGGTAACATGTGAAATATAGGACAG
AACAACTTACACTCAGGACAAGACAAATTAGCACTGAAAGATAAAAGGAA
TATAGATTCTACACAAAGTATACATGCTTCCCACTCACGGGTAAAGAAGA
TCTTTGCCTTTATTGTGAAGTATTTATAAGGCATTTTTTTTCTGTTTCTT
GTAAACCTATTTTAAAAAGCTAAAGGTTATGCTGTTAGCTCTGCAAATTG
ATTCTGACACATGTGTTTCCCTCCTCCATTGTTCAAATTACCAACTGCAT
AACCTTTTGTTCTGCCTCCCAGTATGCGGCTCCTTTGAATGTTCTCTCGA
CTGCAAATGCTCTCTATAAGAATAACCCTACCCAACCCCCCTTCTTGTAT
CACAATACCACCTTATGCTTGTTTAAATATCCTACTCTTTGTAATTACGT
TTCTTCCCCCCCTC

GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAACACTTCAATGGAAGTGTTCCACTTAGTAAG
TGTTATAGTAAACATTTCTTTTAAGGAATTAGTGCTCCACTTCCCTCAGT
TAGAGTTGTACATACTAACGTGCAAAGCTTTAAAAACTTGATGGTAATTT
TTCTTTAAATGAAGTATGGTACCGTGTGCTTTTTTCTTCTTTCTTTCCTT
CCTTCTTTCTTCCTTCTTGTCTTTATTTTCATGAAGTTTAAAAGAATAAT
TATATTGTGATAATCCACATCGTTCTTCTCAGAGCTATGAAGTTTATTAC
ATTGAGGGTGAAACATAATAATTACTTAGCTGCTTATAGTGGTAGGTACT
TATAATGTCAACTCTTGGGAGGTGGATGCTGAAAGATACCAAGTTCAAAG
ATAGACAGGGTTACTTAGTAAGGTCAAAGTTAATTTGTGCAACATCACAG
ATCAAGAACTTTGTCTATAGCTCAGTGGTGCCATGTGCTTTGAGCATGTA
CAAGGCTCTAGTGTCCATCTAACTCTTGATGCCATTAACATATATATATA
CACATACCTACACACATACATATTTTAAGCAACACCTTTTATTTATAACA
TTTGCCCTGCCTGGCTATGTCGGTTCACACCCTTTTATTCCCATAAATTC
GGGATCTTAAAATTCTTTCGTTAATACGAGTTTTTTAGACTCCCTCTTTT
CTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_i10.b1 MSMg01no346_i10.b1 CHROMAT_FILE:
MSMg01no346_i10.b1 PHD_FILE: MSMg01no346_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:14 2005
         (416 letters)



>mm_chr11_37963842_37964657
          Length = 816

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggactatgctttcaacacatgtactaggtattcaatatgtgtctgctgagtataaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggactatgctttcaacacatgtactaggtattcaatatgtgtctgctgagtataaaca 260

                                                                       
Query: 61  aatgacataatgattcaaactgagaacatgaaactggaaggtaagcaagaaacttacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgacataatgattcaaactgagaacatgaaactggaaggtaagcaagaaacttacttc 320

                                                                       
Query: 121 ctgaatggaaagctaattgtgaagatgtctctaatgtgcaaagtattgtgactggggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaatggaaagctaattgtgaagatgtctctaatgtgcaaagtattgtgactggggagc 380

                                                                       
Query: 181 ttagataagaaatgtggagaatactgaaaaccaacacaagagacaaagacaaaaccctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagataagaaatgtggagaatactgaaaaccaacacaagagacaaagacaaaaccctga 440

                                                                       
Query: 241 ttctggttggaaggtctggagtaggtaacatgtgaaatataggacagaacaacttacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctggttggaaggtctggagtaggtaacatgtgaaatataggacagaacaacttacact 500

                                                                       
Query: 301 caggacaagacaaattagcactgaaagataaaaggaatatagattctacacaaagtatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggacaagacaaattagcactgaaagataaaaggaatatagattctacacaaagtatac 560

                                                                   
Query: 361 atgcttcccactcacgggtaaagaagatctttgcctttattgtgaagtatttataa 416
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcttcccactcacaggtaaagaagatctttgcctttattgtgaagtatttataa 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_i10.g1 MSMg01no346_i10.g1 CHROMAT_FILE:
MSMg01no346_i10.g1 PHD_FILE: MSMg01no346_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:14 2005
         (478 letters)



>mm_chr11_38138950_38139827
          Length = 878

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  tggaagtgttccacttagtaagtgttatagtaaacatttcttttaaggaattagtgctcc 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tggaagtgttccacttagtaagtgttatagtaaacatttcttttaaggaattagtgctcc 819

                                                                       
Query: 72  acttccctcagttagagttgtacatactaacgtgcaaagctttaaaaacttgatggtaat 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 acttccctcagttagagttgtacatactaacgtgcaaagctttaaaaacttgatggtaat 759

                                                                       
Query: 132 ttttctttaaatgaagtatggtaccgtgtgcttttttcttctttctttccttccttcttt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttttctttaaatgaagtatggtaccgtgtgcttttttcttctttctttccttccttcttt 699

                                                                       
Query: 192 cttccttcttgtctttattttcatgaagtttaaaagaataattatattgtgataatccac 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cttccttcttgtctttattttcatgaagtttaaaagaataattatattgtgataatccac 639

                                                                       
Query: 252 atcgttcttctcagagctatgaagtttattacattgagggtgaaacataataattactta 311
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 638 atcgttcttctcagagctatgaagtttattacattgagggtgatacataataattactta 579

                                                                       
Query: 312 gctgcttatagtggtaggtacttataatgtcaactcttgggaggtggatgctgaaagata 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gctgcttatagtggtaggtacttataatgtcaactcttgggaggtggatgctgaaagata 519

                                                                       
Query: 372 ccaagttcaaagatagacagggttacttagtaaggtcaaagttaatttgtgcaacatcac 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ccaagttcaaagatagacagggttacttagtaaggtcaaagttaatttgtgcaacatcac 459

                                                          
Query: 432 agatcaagaactttgtctatagctcagtggtgccatgtgctttgagc 478
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agatcaagaactttgtctatagctcagtggtgccatgtgctttgagc 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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