BAC Information

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BAC

Clone NameMSMg01-346I12
Chromosome11 (Build37)
Map Location 110,716,393 - 110,716,866
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
Downstream geneKcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346I12.T7 (MSMg01no346_i12.b1)MSMg01-346I12.TJ (MSMg01no346_i12.g1)
ACCAG459094AG459095
length756749
length of high quality
(start - end)		480 (38 - 517)490 (68 - 557)
definitionCHROMAT_FILE: MSMg01no346_i12.b1 PHD_FILE: MSMg01no346_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:15 2005CHROMAT_FILE: MSMg01no346_i12.g1 PHD_FILE: MSMg01no346_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAA
GCATTGAGAGAGGCGAAGACGCTACAGATTAATATTATCCAGATCGTTAT
TTAATTTGTTTCAGTTACCATGAAATCTAATCAGTGAATGTGTTCTTTTT
CCATATTGCTTTTTATGCTGTTGGGATGTATGTTGCATTTTGTTTCCCTA
GACATTAACCCTGCACCATTTGTCCCTTCCTCTCCATCTCTTGTGCACAC
ATACTTGTGGGTAGCCATGTGTGTTTGCATATTCACTCAGTTTTGCATGC
AAGAGGCACATTGACTTCTCCCATAACCCTCCATCTTACATTTTGAGGTC
TCATACTGAACCCCAAGACTGCCATTTTGGCTGGTATGGCTAGCCAATGT
TCCAAATGGATCTTCCTAGCTCTGTCCCTCCTCCAGCACTAGCTTATAGG
TGTCTGATGTATGCTATACCCACCTTTTCCCATGAGACCTGGGGGGTCAA
AACCCAGGTCCTCTTGCTCGTTCAACAACCATGATACCCCTCTCTACCTC
CTCTAAATTTCTTTTGAGTCAGAATTCTTCTGCATCATTCCTAACCTTCT
TAAAGCCTTTTTAGAAACTTAATCATGGAAGGGGTTCTTGAAAGTCCCCA
AAGAGAAAAAACTTAACTGCACACGGCTCCCCCCCCCATAAAACTTAATA
AATTTCTTCACTATTGTCTAAAATAGCCTGAAATTTTTTTTTTTTCCCTT
ACAAAG

GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCCCCAGTAAAGAATTGCATAGGACCTTCTAC
CAATATGAATGCTAGCTTTTGGCTTATTTCTGATTTGATTTATCATGCCC
AGAAACTAAAAGGTGCAGTATCTTCTCTAATAAAGCCTTACCGTCTACCA
TGCAGTATAGCCAATAGCAGCAGCAAGAGTCAGAGCTATCTGGGAAGCCA
CAGGGTCCTCTATGGCCAACTACTCTTAGACAATTACCCCCAGCACTGAG
ATTTTCATTTAATCCCCTATGATTTATGGGATAGTGTTTTCCACCCTAGA
AGTTACATGAGGTCAAATTACTCTTTGTTTTAGCTATTCAGTTTTCAACT
AAGCTATCCTTTCAACTAACTCAGTTCTATAAGGTAGGCAGACATACTAT
TGGACTGGATATCCTCAGCCCAATTCTGCACACCAGTGTTTGTGAAATGG
CTGTCCTCATCACTGGCTATCCTTCAGAGTACTCATGTACAGCACTAAGT
TGGATGAGGCATCACTTGTTGCTTGCANGAAAATGCTTGCCAAGGACCTA
TGGCAGTTCACATGGGTGTGGGCCCAAGTGCTTCCTTCACTTTCAGGTAT
AGAGGCTCGTGAATCCTACCTGAATCTTGTAAGGAACGGTAAAATTATGC
ATTCGGTCTTGCCAATAAAACCTCCCCCGTTGGTAATATTTAGAAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_i12.b1 MSMg01no346_i12.b1 CHROMAT_FILE:
MSMg01no346_i12.b1 PHD_FILE: MSMg01no346_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:15 2005
         (480 letters)



>mm_chr11_110716393_110717272
          Length = 880

 Score =  901 bits (466), Expect = 0.0
 Identities = 472/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaagcattgagagaggcgaagacgctacagattaatattatccagatcgttatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaattctaagcattgagagaggcgaagacgctacagattaatattatccagatcgttatt 415

                                                                       
Query: 65  taatttgtttcagttaccatgaaatctaatcagtgaatgtgttctttttccatattgctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 taatttgtttcagttaccatgaaatctaatcagtgaatgtgttctttttccatattgctt 355

                                                                       
Query: 125 tttatgctgttgggatgtatgttgcattttgtttccctagacattaaccctgcaccattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 354 tttatgctgttgggatgtatgttgcattttgtttccctagacattaaccctgcaccattc 295

                                                                       
Query: 185 gtcccttcctctccatctcttgtgcacacatacttgtgggtagccatgtgtgtttgcata 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 294 gtcccttcctctccatctcttgtgcacacatacttgtgggtagccatgtgtgtttgcaga 235

                                                                       
Query: 245 ttcactcagttttgcatgcaagaggcacattgacttctcccataaccctccatcttacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttcactcagttttgcatgcaagaggcacattgacttctcccataaccctccatcttacat 175

                                                                       
Query: 305 tttgaggtctcatactgaaccccaagactgccattttggctggtatggctagccaatgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tttgaggtctcatactgaaccccaagactgccattttggctggtatggctagccaatgtt 115

                                                                       
Query: 365 ccaaatggatcttcctagctctgtccctcctccagcactagcttataggtgtctgatgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ccaaatggatcttcctagctctgtccctcctccagcactagcttataggtgtctgatgta 55

                                                                 
Query: 425 tgctatacccaccttttcccatgagacctggggggtcaaaacccaggtcctctt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  tgctatacccaccttttcccatgagacctggggggtcaaaacccaggtcctctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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