BAC Information

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BAC

Clone NameMSMg01-346N02
Chromosome11 (Build37)
Map Location 12,358,734 - 12,359,055
singlet/doubletsinglet
Overlap geneCobl
Upstream geneZpbp, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346N02.T7 (MSMg01no346_n02.b1)MSMg01-346N02.TJ (MSMg01no346_n02.g1)
ACCAG459313AG459314
length673770
length of high quality
(start - end)
---320 (72 - 391)
definitionCHROMAT_FILE: MSMg01no346_n02.b1 PHD_FILE: MSMg01no346_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:36 2005CHROMAT_FILE: MSMg01no346_n02.g1 PHD_FILE: MSMg01no346_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCCGCGCCGCGCGCGGTCCCACGTTGGCGGTCCCCCCCTTCCCAGCTG
GACAGGGGGAGGGGTTCCGNGAGGGAGTGGAGTGGGGCGTCGGCCCCCGC
GCTCGCCGCCGCCCCCCAGCCCCTCCCCCCCCCCCTCGCCGCCCCCGCGC
CTCGGCCCCGGGGCGCGCCCCGCTGTCCACCGAGAGCCCCGCAGCCGACC
CCCCCCCACCGCCCACGCCCGCCACTCCGCCCCACCGCCCCGCCCCCCCG
CACCCCGGCCGGGGCGCCGCCGCGCTCGCCCCACGCGCTCGCGGCGCCCG
CCTGAGGAGGGNNTTTTTTTTTTTNNNTTTCNNNNCCGCCGCGCGCTGAG
GGGGGTGGGAGGAGAAGGAGAGGGGGGGGGGTGCCCCCCGCCCGACGCCT
CGCGCCCGCAGCCTCCCGACCTGGAGGTGGGNNTCNNNNNNNNNNNNNNN
NNNNNNNNNTNNNTTNNNNNNTNNNNNNNNNNNNTNNNTTTNNNTTTNTN
TTCGTNNGNNNNNNTTTTTTTTTTNTTTTTTTNTNTTTTTTTNTTTTTTT
TNNNNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTNTTTTTTTNTNTTTTNNTTTTTTTTTTTTTTTTTTTTNN
TTTTTNTTTTTTCTTTCCCGTCG
TTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTGGAGGCAGGCGTCCTGCTTTGTGTAG
TATCATCTGCCTGTGGCACAGGAGACAGCTGTCATCCAGTACACCAACCC
CACATCCCATTTGTGGTTTGATAAGATAGTCTTAGAACTCACAGGGACTT
CAGTGTCATATGATTCAGTGTGTTCCCAGAATGTGCTAGATACCTCTTTT
GAAAAAAAAAATCCTGACATTTACCTCAGCTTTCACATACCTTTGTTTCT
GCCAGACACTGTGTGATTAGACGGACCAACTAGTGCTGAAGGTTCTCTGC
TCTGTTGAAGCTTGCCAACATGAGGCCTTCCCATGCAGTAGCCCCACAGA
GGACCCCCACACAGGACAGGCACCTGCCCTTTTCTTTGTGACTCACGTTG
TGTATATCTCTGTCCATGTGGCCTTGGCACCACTCTCATCTCTACATCAT
GTACGCGAGGGTTGTTATATTTTTCCTCAGTTTTTGCTCTTCATGGCTCT
AGCGCCCACTAGCATGTATTCGTTATCTGCGGATTTGATTTTCTCTTCGT
TGTCCTTTACCGCGTTCCCCCATCTTTCTTCTTCTTCTCCTTCCCCTTCT
CCCACATTCCTCTTACCTTCCATATACCGCCCCCTTTTTTTTTTCGCACC
TTTTGTTCCCCCTCATGCTATTTCTCCCCTTCCTATCCACCCCTTTATCT
AATTTCCCCCCCTCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_n02.g1 MSMg01no346_n02.g1 CHROMAT_FILE:
MSMg01no346_n02.g1 PHD_FILE: MSMg01no346_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:36 2005
         (320 letters)



>mm_chr11_12358534_12359255
          Length = 722

 Score =  572 bits (296), Expect = e-168
 Identities = 315/322 (97%), Gaps = 2/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggaggcaggcgtcctgctttgtgtagtatcatctgcctgtggcacaggagacagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cttggaggcaggcgtcctgctttgtgtagtatcatctgcctgtggcacaggagacagctg 463

                                                                       
Query: 61  tcatccagtacaccaaccccacatcccatttgtggtttgataagatagtcttagaactca 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 462 tcatccagtacaccaaccccacatcccaattgtggtttgataagatagtcttagaactca 403

                                                                       
Query: 121 cagggacttcagtgtcatatgattcagtgtgttcccagaatgtgctagatacctcttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cagggacttcagtgtcatatgattcagtgtgttcccagaatgtgctagatacctcttttg 343

                                                                       
Query: 181 --aaaaaaaaaatcctgacatttacctcagctttcacatacctttgtttctgccagacac 238
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 342 aaaaaaaaaaaatcctgacatttacctccgctttcacatacctttgtttctgccagacac 283

                                                                       
Query: 239 tgtgtgattagacggaccaactagtgctgaaggttctctgctctgttgaagcttgccaac 298
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgtgtgaacagacggaccaactagtgctgaaggttctctgctctgttgaagcttgccaac 223

                                 
Query: 299 atgaggccttcccatgcagtag 320
           |||||||||| |||||||||||
Sbjct: 222 atgaggccttaccatgcagtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space:   221743
Effective search space used:   221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)