GGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACATTC
TTTCCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC
TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTCC
TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC
TTTCCTTTCCTTTCCTTTCCTTCCCTTCCCTTCCCTTCCCTTACCTTACC
TTACCTTCCCTTCCCTTCCCTTTCCTTTCCTATTCTATTCTTTTCTTTTT
TTACAAATTATATAAGATATTATCTCCATTTACAAATGAAATGCTATGCT
AAAAGTACCTTATACCCTCGCCTCGCCCTGCTCTGCAACCCATCCAATCA
CACGACATGGGTATGGTATTGCACTGAATTGAGGAATATAAGCCTTGCAA
GAGCAAGGGTCTCTCTTAGCAATGATGGGGGACTAGGCCATGTTATGTTA
GATATGCAGCTAGAGACACGAGCTCTGGGGGGACAGGTTAGATCATATTG
CTGAGCCAACGATAGGAGAGCAGAGCACATCAGTGCCTAGGGTAGTTTAT
CTAGCTCCTCCATTGGGTGCGCTGTGTTGAATCCAATAGAGGAAAGTGAA
GAGCCACTGCTGTGTTTGGGAGGTTATGGCATAGCCCCACAAGAGTAAGG
TTAATTAGGGCAATGGAAGGGAAAAGCAAGGCGAGGTAGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTAAGGCTGTACTTTTTATTACAGGCATTCACAA
AAGCTCTGCTTCTGAGATGAGCTTTCACACACACAAGAAAAATAGAAATT
AGGATCTTTGGTCAAGAAAATCTATCAGAGTGACATGAAACCCTCAGTCC
TTGTTCTCCTGCCCCTGGGGACTTCTAACTCTTTCAACAACAGCAGTTAT
GAGAGTACATTTGGGAAATAAAGTCCTGTAACTCTGAAACTTGATGTAAT
TGAAAACTGGCAATTTAATATCTCCCTTCTACACCTAACAAGTGGCCTCA
AGTGGTGTTTTTTTGTGCAGACATGTGTGCTAAGATTTACTTTACAAACC
ATAACATTACCTGACTAGACATATATTTTAAATATGTATGCATAATGTTT
TATTTTAAATTAAGTTGTTTATGGGGGTGAAAATTAACAGTCCCATATAC
AGGTGTGAAATTTCAACTGAACAAGAAAAAGAAGCTTCAGCCGGGCGTGG
TGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT
CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGG
GCTATACAGAGAAACCCTGTCTCTGAAAACCTNNAAAATTAATAAAAAAA
AAGGTAAAAAAAATAGAAAGAAAAGAAGCTTCGAGAAC

Query= MSMg01no346_n16.g1 MSMg01no346_n16.g1 CHROMAT_FILE:
MSMg01no346_n16.g1 PHD_FILE: MSMg01no346_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:39 2005
         (570 letters)



>mm_chr11_10646173_10647143
          Length = 971

 Score =  874 bits (452), Expect = 0.0
 Identities = 470/476 (98%), Gaps = 1/476 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaaggctgtactttttattacaggcattcacaaaagctctgcttctgagatgagcttt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cctaaggctgtactttttattacaggcattcacaaaagccctgcttctgagatgagcttt 260

                                                                       
Query: 61  cacacacacaagaaaaatagaaattaggatctttggtcaagaaaatctatcagagtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacacacaagaaaaatagaaattaggatctttggtcaagaaaatctatcagagtgaca 320

                                                                       
Query: 121 tgaaaccctcagtccttgttctcctgcccctggggacttctaactctttcaacaacagca 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaccctcagtccttgttctcctgaccctggggacttctaactctttcaacaacagca 380

                                                                       
Query: 181 gttatgagagtacatttgggaaataaagtcctgtaactctgaaacttgatgtaattgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttatgagagtacatttgggaaataaagtcctgtaactctgaaacttgatgtaattgaaa 440

                                                                       
Query: 241 actggcaatttaatatctcccttctacacctaacaagtggcctcaagtggtg-ttttttt 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 actggcaatttaatatctcccttctacacctaacaagtggcctcaagtggtggttttttt 500

                                                                       
Query: 300 gtgcagacatgtgtgctaagatttactttacaaaccataacattacctgactagacatat 359
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcagacatgtgtgctaagacttgctttacaaaccataacattacctgactagacatat 560

                                                                       
Query: 360 attttaaatatgtatgcataatgttttattttaaattaagttgtttatgggggtgaaaat 419
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 attttaaatatgtatgcataatgttttattttaaattaagttgtttataggggtgaaaat 620

                                                                   
Query: 420 taacagtcccatatacaggtgtgaaatttcaactgaacaagaaaaagaagcttcag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacagtcccatatacaggtgtgaaatttcaactgaacaagaaaaagaagcttcag 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)