BAC Information

Click to search

BAC

Clone NameMSMg01-346O21
Chromosome11 (Build37)
Map Location 3,719,025 - 3,719,368
singlet/doubletsinglet
Overlap geneOsbp2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream geneLOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346O21.T7 (MSMg01no346_o21.b1)MSMg01-346O21.TJ (MSMg01no346_o21.g1)
ACCAG459399AG459400
length751803
length of high quality
(start - end)		495 (32 - 526)347 (62 - 408)
definitionCHROMAT_FILE: MSMg01no346_o21.b1 PHD_FILE: MSMg01no346_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:44 2005CHROMAT_FILE: MSMg01no346_o21.g1 PHD_FILE: MSMg01no346_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGCTCTG
TCCGCACCATGCCTGCCTGAATACTGCCATGCTCCCACCTTGATGATAAT
GGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTTTTTT
ATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGGAGTAAAACCCTAAC
TAAGACACCTCTTGAAGTAAGGAAAGTATTTACCTTAATGTAGGTTTGTA
TAGGAGCCCACAGTGGAAACTTTGAACTTTTAAAAGAACTTTTGGATTTT
TAAAGAGACTGTATATTTTGCTAGGCTGTGGTAGCGCACACCTTTAATCC
CAGCACTCAGGAGGCAGAGGCAGGTAGATCTCTATGAGTCAGATGGCCAA
TCTGGTCTACAGAGCTAGCTCCAGGACAGGCTACACAAAGAAACCCTGTT
TTGAAAAAAACAAAACAACAAAAAAAGAGAGTGGACATTTTTCACAGACT
GAATTTTTAATGTGTTTGAATTTGTAGGGGTAGGGAGGGCATATGCCACT
TTTGCCTTTTCTCTTCCCCTTTCTCTTTTCATTTTTTCTTTTCTCCCTTT
TCCTTACATTTTCCTTCTCCCTTATCACACCTCTATTTTTTTATCTTATA
CATCTCTTACCCTACTTTTCTCGTTCTCTTTTTTCCTCTTACTATACTAT
TTGTTCCCTATTATTTTTCTTCCCATTTCTCCTTCCCTCCTATTCCCACA
T

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAAAAGCCTATGAATAAAACCCATGTTTGACTCCTGATC
CTAGCTACCTACCTTGGTCTCTCACTGGAGGCCATCAGATGTGCTGGAGA
TGGTCATCTTTATGCACATGCCCAAGTGGGTGCTGGTTTAAAACACAACA
CTTCACTGCCCTTTTCTGTTTAGCTATCTATCCTAAATGTGTCCCCTGTT
AGTACGTAAAAGCATTATGGTTTTTCATTGTATGGAGGTACCATAGTTCA
TTTAGCCTGTTGTCTGTGAATGGGCCACTAGGCTGTTTTCTTAAGATTTA
TTTATTTTATTGGTATGATTATTTTGTGTATGCATGGTGTGTGTGTGTGT
GTGTGCGNCTCTCTCTTCCTTCTTAATAATTACCTGACGCCCTCTTACAG
GAGCTATGGACAATTGTAATTCTTTCAACTCACGTTTTTCTGAAAACAGC
AAATGCTTTCAACCTCCTGGGTCCTTGCTCCTATCCCCACTTTTGTCCTT
TTCCCGTTCCCCATTATATCCCCATTTTATTTTTTTGTTGCCGTTTCCAT
TTCCCCCCATTTTTTTCGCTCTTCCTCTATTTTCCCCTCTTCGTCAGCAC
GCTTTTTCCTCGTTTTCTCTATTTTATTTTCCTTTATTTTTTTCTTGCCC
TGTTCTTCCAATTCACCACCGCCCTTATTTCTACCCCTCTTCCATCCTTC
GTTATACCACCTACTTCCCTCCTCTCCTTTTTCTCTTTTTTTCCTCCCTC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_o21.g1 MSMg01no346_o21.g1 CHROMAT_FILE:
MSMg01no346_o21.g1 PHD_FILE: MSMg01no346_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:44 2005
         (347 letters)



>mm_chr11_3718964_3719710
          Length = 747

 Score =  642 bits (332), Expect = 0.0
 Identities = 341/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaagcctatgaataaaacccatgtttgactcctgatcctagctacctaccttggtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 caaaagcctatgaataaaacccatgtttgactcctgatcctagctacctaccttggtctc 346

                                                                       
Query: 61  tcactggaggccatcagatgtgctggagatggtcatctttatgcacatgcccaagtgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcactggaggccatcagatgtgctggagatggtcatctttatgcacatgcccaagtgggt 286

                                                                       
Query: 121 gctggtttaaaacacaacacttcactgcccttttctgtttagctatctatcctaaatgtg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 285 gctggtttaaaacacaacacttcactgcccttttctgcttagctatctatcctaaatgtg 226

                                                                       
Query: 181 tcccctgttagtacgtaaaagcattatggtttttcattgtatggaggtaccatagttcat 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 225 tcccctgttagtacataaaagcattatggtttttcattgtatggaggtaccatagtttat 166

                                                                       
Query: 241 ttagcctgttgtctgtgaatgggccactaggctgttttcttaagatttatttattttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ttagcctgttgtctgtgaatgggccactaggctgttttcttaagatttatttattttatt 106

                                                       
Query: 301 ggtatgattattttgtgtatgcatggtgtgtgtgtgtgtgtgtg 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ggtatgattattttgtgtatgcatggtgtgtgtgtgtgtgtgtg 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |