Query= MSMg01no347_a12.b1 MSMg01no347_a12.b1 CHROMAT_FILE:
MSMg01no347_a12.b1 PHD_FILE: MSMg01no347_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:52 2005
(422 letters)
>mm_chr11_70195259_70196080
Length = 822
Score = 687 bits (355), Expect = 0.0
Identities = 362/367 (98%), Gaps = 5/367 (1%)
Strand = Plus / Minus
Query: 61 caatgacttaaaatatctttacattttaataatttatatttaatccaaagaagagtcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 caatgacttaaaatatctttacattttaataatttatatttaatccaaagaagagtcatg 763
Query: 121 tatttgtgtgtgtctgtgtgttcttttgagatgatctcacagtggcctggaacactgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tatttgtgtgtgtctgtgtgttcttttgagatgatctcacagtggcctggaacactgtgt 703
Query: 181 agaaaaccaggctggccatgaactcacacagatctgcctgtctgggactgaagatgtaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agaaaaccaggctggccatgaactcacacagatctgcctgtctgggactgaagatgtaac 643
Query: 241 ccaccacgttcagcac-----ccccccccttgatgctgcttggacacacacctctcctat 295
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ccaccacgttcagcacaccccccccccccttgatgctgcttggacacacacctctcctat 583
Query: 296 ccttgtggctgggatcttgctatcatccaggaactccctttgccaaggtccttgatcgct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ccttgtggctgggatcttgctatcatccaggaactccctttgccaaggtccttgatcgct 523
Query: 356 tccgcttttcctgcttcctggaccctgtgttcctctgtcttggtttattttctgtgtcat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tccgcttttcctgcttcctggaccctgtgttcctctgtcttggtttattttctgtgtcat 463
Query: 416 cggggca 422
|||||||
Sbjct: 462 cggggca 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_a12.g1 MSMg01no347_a12.g1 CHROMAT_FILE:
MSMg01no347_a12.g1 PHD_FILE: MSMg01no347_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:53 2005
(467 letters)
>mm_chr11_70022443_70023309
Length = 867
Score = 826 bits (427), Expect = 0.0
Identities = 464/491 (94%), Gaps = 24/491 (4%)
Strand = Plus / Plus
Query: 1 tctctacagcaattactcagtgctcacatattctcaggaagtgatgaagcctttgagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tctctacagcaattactcagtgctcacatattctcaggaagtgatgaagcctttgagtgt 236
Query: 61 agagagccattccagacttcctggccagccggacagaagtctgctccaggtagtaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 agagagccattccagacttcctggccagccggacagaagtctgctccaggtagtaaacaa 296
Query: 121 gcccatgtttggtggatggcccacccttaatccctgattggctgagcaaacctgcctggt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 297 gcccatgtttggtggatggcccgcccttaatccctgattggctgagcaaacctgcctggt 356
Query: 181 gaggtgatgtgacctgtggtgattg--------------gtggtg----------gcgtg 216
||||||||||||||||||||||||| |||||| | |||
Sbjct: 357 gaggtgatgtgacctgtggtgattgaggtgatgtgacctgtggtgattggtgggggtgtg 416
Query: 217 gttgtggctggagtggagaaaaacacttgtaactagagatgctgggggattttaagaaag 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gttgtggctggagtggagaaaaacacttgtaactagagatgctgggggattttaagaaag 476
Query: 277 tagctgcctgagtaaactgcttaaagaagaactggtggttgcgtctttcttgctggccaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tagctgcctgagtaaactgcttaaagaagaactggtggttgcgtctttcttgctggccaa 536
Query: 337 gtgggacgtgacatttgagcaccacagagatcacctgtgtgcctccaggtgacttccccc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtgggacgtgacatttgagcaccacagagatcacctgtgtgcctccaggtgacttccccc 596
Query: 397 tatgacttcacaggaacttcatgagcccctcccctttccaataggaaatgagagtgtata 456
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tatgacttcacaggaacttcacgagcccctcccctttccaataggaaatgagagtgtata 656
Query: 457 tctcacccagg 467
|||||||||||
Sbjct: 657 tctcacccagg 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
