BAC Information

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BAC

Clone NameMSMg01-347H23
Chromosome11 (Build37)
Map Location 98,940,311 - 98,940,805
singlet/doubletsinglet
Overlap geneTns4
Upstream geneFbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4
Downstream geneCcr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347H23.T7 (MSMg01no347_h23.b1)MSMg01-347H23.TJ (MSMg01no347_h23.g1)
ACCAG459824AG459825
length763753
length of high quality
(start - end)
502 (47 - 548)456 (81 - 536)
definitionCHROMAT_FILE: MSMg01no347_h23.b1 PHD_FILE: MSMg01no347_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:29 2005CHROMAT_FILE: MSMg01no347_h23.g1 PHD_FILE: MSMg01no347_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAAGGGCTGTCCCAGGGTACAGAACCTCTCTTGGCCTAGAGGAT
CTCTTATCACTTAAACTAGCCAATGGAATTAACCTCCAGCAGGTTAGCCT
GGCCTGCATTTTCTGCTTTCCCAACTAGGCTGCTCTGATGGAATTGTCAC
AGACAGCAGTAGCTCCACTACCTATCACTCTCAGGAGCCCTGTGGGGACA
GGCTGTACTGGACATGTCTTGGGCTGATCCAGGGGGGACATGTTCCATCT
GGAGGAGGTCACCTCAACTAGGCCAGCAGTTACAGTGGTGGGATCTCTGG
CTTCTTTGCCAGGGGCTGCTTTGGCCATTGCCTTTGGAGTTAGTGTGTGG
GACGAGTTAGCGTGTAGGTCCAGTGGTGGTTCAGCTGTCCTGCAGCTGGA
TGGGTTGTTGTGCATTTCTATTGTGAGGCTTAAGAACAGTTGTAAATAAG
GCCCAGGGGGTTGGTCCCTCCTAACTAGGCTTTGTCAGTACCAGGGTGGA
GGGAGCCAGGGCCAGATGAGGGGGGCGGCTTTCATTCCTAGATGCTTCCA
CTTAGGTCCCCAGTCTGTGTATACTCCTGAATGCACTTATTGTTCAAATT
TTTTNNNNTCACGCCGGTGACGCCCTGCCCCGGCGAGACCCCNGAACACA
TAGGGCTTCCTGCTATTTCCATTATCTGAATTTTGTTCCCGCCTAAATCC
CTTGTTGGAACCG
NNNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGGCCCCGGGGGTGTTT
TCTGCAGCCTGGCTAGCTCCAGACCTGTAATTAAGTCTAGTGGTATGCTG
GCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGATGGGATTGCA
AGCTTGTACAAGCACTCTGGAAGTCAGTCTGGCGGTTCCTCAGAAAATTG
GACATCATATTACCGGAAGATCCAGCAATACCTCTGCTGGGCATATACCC
AGAAGATGTTCCAACAGATAATAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTAGAAAGAACCCAGATGTCCCTTA
ACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTA
CTCAGCTATTAAAAACAATTTATGAAATTCCTAGGCAAATGGATGGATCT
AGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACTTG
ATATGCACTCACTGATAAGTGGATATTAGCCCAGAAGCTTANAATACCGG
AGATACAATTGCNAAACCCNAGAAATCCNGAAGAAGGAAGACACCGTGTG
GAACTTCATTCCTCCTTAAATAGGGAACAAAAACCCTGGGAGGATTTCTA
AAACAAGTTTGGAGTTAAACAAAGGAGGTCCTTCCCAAAGTACCCCCCCC
CGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_h23.b1 MSMg01no347_h23.b1 CHROMAT_FILE:
MSMg01no347_h23.b1 PHD_FILE: MSMg01no347_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:29 2005
         (502 letters)



>mm_chr11_98940107_98941005
          Length = 899

 Score =  909 bits (470), Expect = 0.0
 Identities = 490/498 (98%), Gaps = 3/498 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaagggctgtcccagggtacagaacctctcttggcctagaggatctcttatcac 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaagggctgtaccagggtacagaacctctcttggcctagaggatctcttatcac 264

                                                                       
Query: 65  ttaaactagccaatggaattaacctccagcaggttagcctggcctgcattttctgctttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 ttaaactagccaatggaattaacctccagcaggttagcctggcctgcattttccgctttc 324

                                                                       
Query: 125 ccaactaggctgctctgatggaattgtcacagacagcagtagctccactacctatcactc 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaactaggctggtctgatggaattgtcacagacagcagtagctccactacctatcactc 384

                                                                       
Query: 185 tcaggagccctgtggggacaggctgtactggacatgtcttgggctgatccaggggggaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaggagccctgtggggacaggctgtactggacatgtcttgggctgatccaggggggaca 444

                                                                       
Query: 245 tgttccatctggaggaggtcacctcaactaggccagcagttacagtggtgggatctctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttccatctggaggaggtcacctcaactaggccagcagttacagtggtgggatctctgg 504

                                                                       
Query: 305 cttctttgccaggggctgctttggccattgcctttggagttagtgtgtgggacgagttag 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttctttgccagggactgctttggccattgcctttggagttagtgtgtgggacgagttag 564

                                                                       
Query: 365 cgtgtaggtccagtggtggttcagctgtcctgcagctggatgggttgttgtgcatttcta 424
           |||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 cgtgtaggtccagtggt---tcagctgtcctgcagctggatgggctgttgtgcatttcta 621

                                                                       
Query: 425 ttgtgaggcttaagaacagttgtaaataaggcccagggggttggtccctcctaactaggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttgtgaggcttaagaacagttgtaaataaggcccagggggttggtccctcctaactaggc 681

                             
Query: 485 tttgtcagtaccagggtg 502
           ||||||||||||||||||
Sbjct: 682 tttgtcagtaccagggtg 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 899
Length adjustment: 10
Effective length of query: 492
Effective length of database: 889
Effective search space:   437388
Effective search space used:   437388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)