BAC Information

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BAC

Clone NameMSMg01-348B12
Chromosome11 (Build37)
Map Location 116,518,243 - 116,518,710
singlet/doubletsinglet
Overlap geneOTTMUSG00000003947
Upstream geneGrb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb
Downstream gene1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348B12.T7 (MSMg01no348_b12.b1)MSMg01-348B12.TJ (MSMg01no348_b12.g1)
ACCAG460276AG460277
length735745
length of high quality
(start - end)		472 (40 - 511)272 (72 - 343)
definitionCHROMAT_FILE: MSMg01no348_b12.b1 PHD_FILE: MSMg01no348_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:16 2005CHROMAT_FILE: MSMg01no348_b12.g1 PHD_FILE: MSMg01no348_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTTCTTCCCCAGCTTGTCTGTAACTCTCCCTGGTGGTCCCTCCCACCCAC
GACCCCAATCCACAGCCCCATCAGTTTCTCACGGTTCCACTCGGTTGGTA
AATCTACGGCGCCACAGCATGGCCAAGCTGAACAGGAAGAGGGTGGTGCA
CATGGCTCAGCTGCCCCATCCCCACCGACGACCAACTCCGCTGAAGAAGG
CCACAGGGCCGGGGAGCCACAATGGCCAGCCTACCTCTCCCAAGCCACCG
CTGTGTTTCCTGAAGTTCCTGGGAAGGGATTAGGACGTTCAAGCTGATTA
GTGGAGTGGGCAGACCTGACCTTGTGAAGAGAGATTAAACTCACCAGGCC
CAAGATCTCCCCTCTAGTGGCAGAGTAAGTCAGCCTCCTTCAAGGCATGC
CAGGTAACCCTGAGTGCCCCTCCAGAATGTTCTACCCAGAACATTCACTA
CTATCCGGGCTTTGGCATCCAGGGACGTAGTGCAATCGAGCTAAGTGAGC
TACTTCCACACACTGTTAAATGTACCTGCAGACCTGATGACTTATAAGCA
TCCAGGATAGCTTCTAAGACGATCTGGGGTCTTGCCCTCGTGACTAAGAC
CTGTAAGCCCCTGTGGAAAGCGAGGGGCGCCCCCTAGTTTTAAAACCTGC
CAGATCCCTCCCAAACCCCCCTAAGTCATACCTGG

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAGGGCTACACAGAGAGACC
CTGTCTCAAACCCCCCCCCCCAAAAAAAAGAATAGCCCCTGTAGGCTGCT
CTTATATTTAAATGTTTAGGGAGTGGTGCTATTTGTAATGATTGGGAGGC
ATGGTCTCGGAGGAAATGTGTCACTGAGGGGCAAGCCAGGTCCAGGGTCT
CTCTCCTACTGCCTGCTGATCTGGTTACAGAGCTCTCTGCTATTTCTCCT
GCATCGTGTCTACCCGTGTGCCGCCATGCTTTTGGCCAAGATGATATATC
AAATCTTTGAAACTGTAAGCAAGTCTTGGTCATGGTGCCTCCTCACAGGA
ATAGAACAGAAACTGTGTACTTTGCTTGCTTGCTTGCTTTGAGACCAGGT
CTCACTGCGTAGCACTGGTTAGCCAAGAACTGGCTATGCAGGCCAGGTTG
ACCTCAAATTCAAAGAGATTCTCCTGTTTCTGCCTCCCCAGCGTTGTTTT
TACTCCTTCCCCCCTTTTCTTTTATCTCTTACTTTTCCCCCACACTCTTC
TTTTCCCTATTTCTGTCACGCTTTCTCCCTTCCCTCCTTATCCCCTTTCT
TTTTCTCTTCCCCATCTTGGACGCTCCTCATTACTGGCTCTCCCCCCCTT
GTTTTTTGCCCTTTTTCTTTCTTTTGCCTCCCCCTTTTCTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_b12.b1 MSMg01no348_b12.b1 CHROMAT_FILE:
MSMg01no348_b12.b1 PHD_FILE: MSMg01no348_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:16 2005
         (472 letters)



>mm_chr11_116518024_116518895
          Length = 872

 Score =  880 bits (455), Expect = 0.0
 Identities = 465/471 (98%), Gaps = 6/471 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttcttcc---ccagcttgtctgtaactctccctggtggtccctcccacccac 61
           ||||||||   ||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattcct---ttccagaccagcttgtctgtaactctccctggtggtccctcccacccac 631

                                                                       
Query: 62  gaccccaatccacagccccatcagtttctcacggttccactcggttggtaaatctacggc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaccccaatccacagccccatcagtttctcacggttccactcggttggtaaatctacggc 571

                                                                       
Query: 122 gccacagcatggccaagctgaacaggaagagggtggtgcacatggctcagctgccccatc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gccacagcatggccaagctgaacaggaagagggtggtgcacatggctcagctgccccatc 511

                                                                       
Query: 182 cccaccgacgaccaactccgctgaagaaggccacagggccggggagccacaatggccagc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cccaccgacgaccaactccgctgaagaaggccacagggccggggagccacaatggccagc 451

                                                                       
Query: 242 ctacctctcccaagccaccgctgtgtttcctgaagttcctgggaagggattaggacgttc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctacctctcccaagccaccgctgtgtttcctgaagttcctgggaagggattaggacgttc 391

                                                                       
Query: 302 aagctgattagtggagtgggcagacctgaccttgtgaagagagattaaactcaccaggcc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagctgattagtggagtgggcagacctgaccttgtgaagagagattaaactcaccaggcc 331

                                                                       
Query: 362 caagatctcccctctagtggcagagtaagtcagcctccttcaaggcatgccaggtaaccc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caagatctcccctctagtggcagagtaagtcagcctccttcaaggcatgccaggtaaccc 271

                                                              
Query: 422 tgagtgcccctccagaatgttctacccagaacattcactactatccgggct 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgagtgcccctccagaatgttctacccagaacattcactactatccgggct 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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