BAC Information

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BAC

Clone NameMSMg01-348M08
Chromosome11 (Build37)
Map Location 11,854,869 - 11,855,435
singlet/doubletsinglet
Overlap geneGrb10
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc
Downstream geneCobl, LOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348M08.T7 (MSMg01no348_m08.b1)MSMg01-348M08.TJ (MSMg01no348_m08.g1)
ACCAG460788AG460789
length7151,286
length of high quality
(start - end)
567 (60 - 626)---
definitionCHROMAT_FILE: MSMg01no348_m08.b1 PHD_FILE: MSMg01no348_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:11 2005CHROMAT_FILE: MSMg01no348_m08.g1 PHD_FILE: MSMg01no348_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGAATTCA
GTTTCACCATTCCTTAGGTCCCGGTCAGCAGCAGCAAGGCCCAATACAGG
AAGCTGTGGTAAGAATCTATGCCAAGACTGGGAGCAAAGAAGCCGGAAAG
ACCCCCATACTGTTCACCTGCTGGGACCATGAAGACAAAAGGCCAGAACA
CCACTTCTTACTAAACACCTTCCTTTAAGTCTGCAAAGAAAGGGGCTTTT
GTTCCTTCCTCTATATGGTGAATGTATAAGAAATGACAACAGAAAGTCAG
GGAACAATGGAACATTTTATTACCTCATGGGGCCCTTATAGCAGAGTGTG
TAGTGGGCCAATTCAGCAAAAAGCACCTCCATCCCTCTTGAAAAGTTTTA
TACTGTTGATGTGATTGTACCCTGTCTCTTTCACATTACTGTTTTATTTT
TAAAGCAATTAAGTATTTGGTTCGTTTGTTTGTGATGCTTTCCCGTTGCA
TCTTAACCAGTTGAGGTCTGCTTTCTAAGAATTGGGAGTACTGGTGAACA
GGTATTTAGAGCCCTCCTCATCTCTCTACCAAGTTCCCTCCAGGCTTTCA
GTTGTCGAAACTCACCCGTCCAGGTCTGTGGACAAAGATCACTGCCAGAT
TCTCAAGAAACAACCTAATAACCAGTGTCCCACCGATACTGTGAATCCAG
TGGCCCGGATGTCCT
CTTCCCGGCTGGTTTATCTCGCGCGGATGCAGACAACGACCCCTACGCCA
GCAGAATAATGCACTGAAGCCTACACGGGAAGAGCGGACGCGCGGGGAAG
CTCTTTCGCGGGTTTGATACTATACACGCCGGATATCGGATTTACGCACT
CACATCCGACCTCTCGAGCGCGATACATAAACATTGTATAAATTTTGTAC
GTATTAAACACATACAACACTGCTAAATATGAGTTTCACCTCTAGTCCGT
ATTATTATTTCGCAGATCATCACACCGCCGAGTAGCCGACGAGTTACCGT
GCGATAGCATAAATGATTAGAATGTCTGTTTTCATGTTACCAGAGTTATA
TTATAATTTATCTTAATCTAACATTACTACAAAATTATTCACTAACTCGG
CGCTATCATCCCATGCCGTCTTCTCTATCTCGTTGACGGTCTAGGCGTCG
AGTCAGCGTTATTGTTTGTAGCTGCTTTTAGTAGCGCTTGTCTCTATATT
ATGTTGATTTGTTCGCAGAACGGACACAGGCGCTTAACAGCGATATGAGT
TCTCTGTGACGTACCCAAAATTTATCACTTATATTATTTTCTCACCGCAT
ATTTCTTGATTATGATATTCGCCCGGACCTTTTTTATTAGTGATCGCGAC
GCCGCACAATATAGTACAGATATTTCATTATATACCATAGCGGTGACCAC
GCGCAATCTACTTCGTTCTTACGGCACGGCGGCTATAATGTTCCTTACAA
ACNGGTATTGAGACGCGCGTGATATAACACCGTACGGTCGACATATCTTG
TCCATATATAGTATTATAGTGCCGTATTAATTGTTATATTATTATTAATA
TAGACAAGACGTCCAGCACGGACGTCAGCTCGTACAGACGAGTTTTCATC
ATCTTTNATCTTTCTCCGCTTCGCGCTTATCACGATTCCGCGCCCGCCGC
TGTCTTATGTGTTTATATTCATTCTAATTTTATGCAATCTAGCCGTCCGC
CGTAGTTGTATGCACAGCGCCTCTCAGCTCATAGATATACGTATAGTCCA
TATATCTTCTATACCACGATCGACACGTAGTATCGCACGCACGCGATTCC
GCGCGTCGATATTCAGATATACGGACCGGTGACTCTATTGCTGCGTAATT
ATTACTATATATTATGTGTCAGTAGATGTTCANCCGCGCAATACGATTCT
CTGTTATATCCTCATAGCTGTATGTGTAGACGAATGATGAATACTACAGC
GCTGTTATAGATATCCGCAGCTACACATATCAAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_m08.b1 MSMg01no348_m08.b1 CHROMAT_FILE:
MSMg01no348_m08.b1 PHD_FILE: MSMg01no348_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:11 2005
         (567 letters)



>mm_chr11_11854669_11855635
          Length = 967

 Score = 1058 bits (547), Expect = 0.0
 Identities = 562/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccttaggtcccggtcagcagcagcaaggcccaatacaggaagctgtggtaagaatcta 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 767 ttccttaggtcccggtcagcagcagcaaggcccattacaggaagctgtggtaagaatcta 708

                                                                       
Query: 61  tgccaagactgggagcaaagaagccggaaagacccccatactgttcacctgctgggacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgccaagactgggagcaaagaagccggaaagacccccatactgttcacctgctgggacca 648

                                                                       
Query: 121 tgaagacaaaaggccagaacaccacttcttactaaacaccttcctttaagtctgcaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tgaagacaaaaggccagaacaccacttcttactaaacaccttcctttaagtctgcaaaga 588

                                                                       
Query: 181 aaggggcttttgttccttcctctatatggtgaatgtataagaaatgacaacagaaagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaggggcttttgttccttcctctatatggtgaatgtataagaaatgacaacagaaagtca 528

                                                                       
Query: 241 gggaacaatggaacattttattacctcatggggcccttatagcagagtgtgtagtgggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 527 gggaacaatggaacattttattacctcatggggcccttatagcagagtgtgtagtgggca 468

                                                                       
Query: 301 aattcagcaaaaagcacctccatccctcttgaaaagttttatactgttgatgtgattgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aattcagcaaaaagcacctccatccctcttgaaaagttttatactgttgatgtgattgta 408

                                                                       
Query: 361 ccctgtctctttcacattactgttttatttttaaagcaattaagtatttggttcgtttgt 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ccctgtctttttcacattactgttttatttttaaagcaattaagtatttggttcgtttgt 348

                                                                       
Query: 421 ttgtgatgctttcccgttgcatcttaaccagttgaggtctgctttctaagaattgggagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttgtgatgctttcccgttgcatcttaaccagttgaggtctgctttctaagaattgggagt 288

                                                                       
Query: 481 actggtgaacaggtatttagagccctcctcatctctctaccaagttccctccaggctttc 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 287 actggtgaacaggtatttagagccctccccatctctctaccaagttccctccaggctttc 228

                                      
Query: 541 agttgtcgaaactcacccgtccaggtc 567
           || ||||||||||||||||||||||||
Sbjct: 227 agctgtcgaaactcacccgtccaggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)