Query= MSMg01no348_m21.b1 MSMg01no348_m21.b1 CHROMAT_FILE:
MSMg01no348_m21.b1 PHD_FILE: MSMg01no348_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:13 2005
(488 letters)
>mm_chr11_86356001_86356889
Length = 889
Score = 901 bits (466), Expect = 0.0
Identities = 481/486 (98%), Gaps = 1/486 (0%)
Strand = Plus / Minus
Query: 4 ggaattccacttatccttttaatcagatgtggtgagttctaaatttgaagcacacacagg 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ggaattccacttagccttttaatcagatgtggtgagttctaaatttgaagcacacacagg 630
Query: 64 attactttaattataaatatgatccactgttcagttatattggttccatatggcagtggt 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 attactttaattataaatgtgatccactgttcagttatattggttccatatggcagtggt 570
Query: 124 tttggagtagagccagagagaaaactggtaaggagcacttctgtgagtactgtgactagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 569 tttggagtagagccagagagaaaactggtaaggagcacttctgtgagtactgtgattagt 510
Query: 184 tg-tggtggaattttcagtctgggtttatcatccttggagagtacagtagtgcattacag 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgctggtggaattttcagtctgggtttatcatccttggagagtacagtagtgcattacag 450
Query: 243 ttcttggtatgaactggatggagccttatttctttctctctctctcagtgtgcttcagga 302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 449 ttcttggtatgaactggatggagccttatttctttttctctctctcagtgtgcttcagga 390
Query: 303 acagtaggtgcttgagtgttggcctactcttgggcttttgttttgcaggaaggattctga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acagtaggtgcttgagtgttggcctactcttgggcttttgttttgcaggaaggattctga 330
Query: 363 aaggatgttgaggagggggacaggaaaagtggatcagaggatgaaatgtgaccacaacca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaggatgttgaggagggggacaggaaaagtggatcagaggatgaaatgtgaccacaacca 270
Query: 423 taggggcaggaatttaggaggaagagcagaagtaatccaagaggattttgaagaagatac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taggggcaggaatttaggaggaagagcagaagtaatccaagaggattttgaagaagatac 210
Query: 483 ttttag 488
||||||
Sbjct: 209 ttttag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space: 420162
Effective search space used: 420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_m21.g1 MSMg01no348_m21.g1 CHROMAT_FILE:
MSMg01no348_m21.g1 PHD_FILE: MSMg01no348_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:14 2005
(370 letters)
>mm_chr11_86171563_86172332
Length = 770
Score = 696 bits (360), Expect = 0.0
Identities = 366/368 (99%)
Strand = Plus / Plus
Query: 1 acgggttttcccttcgctttaatggcggccacagggaccagctcgccctctctgctcgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgggttttcccttcgctttaatggcggccacagggaccagctcgccctctctgctcgcc 260
Query: 61 cattggccgccgcgaggtcacgtggtccgggctccgtagggaggggggagagagaaggcg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cattggccgccgcgaggtcacgtgggccgggctccgtagggaggggggagagagaaggcg 320
Query: 121 gtgagggagggcagggaagctttcggagccccggggacccggcggccagctggtggctac 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gtgagggagggcagggaagctttcggagccccggggaccgggcggccagctggtggctac 380
Query: 181 taacatggcgccatctgctggatgccccggttaagatgacccgagtcttggccctagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacatggcgccatctgctggatgccccggttaagatgacccgagtcttggccctagctt 440
Query: 241 tctgctggctggggaaagtgcagcagcgcaggaaggttcacttcaaaatcgagaattact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgctggctggggaaagtgcagcagcgcaggaaggttcacttcaaaatcgagaattact 500
Query: 301 tggaaatcagttcaaattctttggaagagaaagttggcaaaaaaaaaaaaaaaagagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaaatcagttcaaattctttggaagagaaagttggcaaaaaaaaaaaaaaaagagaga 560
Query: 361 gagagaga 368
||||||||
Sbjct: 561 gagagaga 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
