Query= MSMg01no349_d12.b1 MSMg01no349_d12.b1 CHROMAT_FILE:
MSMg01no349_d12.b1 PHD_FILE: MSMg01no349_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:46 2005
(651 letters)
>mm_chr11_61067446_61068501
Length = 1056
Score = 1052 bits (544), Expect = 0.0
Identities = 624/654 (95%), Gaps = 8/654 (1%)
Strand = Plus / Plus
Query: 5 gaattctgtttttctatggtagtaacaacctcagaaacatccaacaactcaggagaatct 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgttttccaatggtagtaacaacctcagaaacatccaacaactcaggagaatct 264
Query: 65 ctaagaatttccttattatttgtatccttctaagatttttttaaaacagctgataaaaaa 124
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 265 ctatgaatttccttattatttgtatccttctaagattttttttaa-cagctgataaaaaa 323
Query: 125 ------gtaaattaatttggggtcaggtctctggcccaccacgcatgcttgtatttctcc 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 agataagtaaattaatttggggtcaggtctctggcccaccacgcgtgcttgtatttctcc 383
Query: 179 catcatcttgtgtgctagttttggaaattgtatttaaaaatccagtaagagctgatggca 238
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 384 catcatcttgtgtgctagttttggaaattgtatttaaaaatccagtaagagccggtggca 443
Query: 239 tggctcagcaagcaaaggtatgagtacagtgctgaggcactgagcctacccacttgattt 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 tggctcagcaagcaaaggtatgagtacagtgctgaggcactgagcctacccacttggttt 503
Query: 299 aaatccctaaaacccacacagaaggagagaaaacctccctcaagtcatctcccaactttt 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 504 aaatccctaaaacccacacagaaggagagaaaacgtccctcaagtcatctcccgactttt 563
Query: 359 atatatatgctagttcatttttatgtcaacttgagttatttgagaagaggaacctcagtt 418
| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 acatatatgctagttcgtttttatgtccacttgagttatttgagaagaggaacctcagtt 623
Query: 419 gagaagatacctccatcagatcgcctacaggcaaatctcctgattaatgacgttgacagg 478
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 624 gagaagatacctccatcagatcgcctacaggcaaatctcctgattaatgatgtggacagg 683
Query: 479 cccaggacacaggggtggtgtcccaccttgggtgggtcatcctaggatgtttaagaaagc 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 684 cccaggacacaggggtggtgtcccaccttgggcgggtcatcctaggatgtttaagaaagc 743
Query: 539 aggttgtgcaagccaa-aggagcaagctagtgagcaggggtcctccatggcttctgctta 597
||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 744 aggctgcgcaagccatgaggagcaagctagcgagcaggggtcctccatggcttctgctta 803
Query: 598 ggtccctacctccaggtgcctgtttcccttcccttggggacggggaatgacctg 651
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggtccctgcctccaggtacctgtttcccttcccttggggacggggaatgacctg 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1056
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1046
Effective search space: 670486
Effective search space used: 670486
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_d12.g1 MSMg01no349_d12.g1 CHROMAT_FILE:
MSMg01no349_d12.g1 PHD_FILE: MSMg01no349_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:46 2005
(471 letters)
>mm_chr11_61156467_61157337
Length = 871
Score = 903 bits (467), Expect = 0.0
Identities = 470/471 (99%)
Strand = Plus / Minus
Query: 1 aaaaattttgtttctctaataaataaggtaaacaccatatagtgcaatgtgggggagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaaaattttgtttctctaataaataaggtaaacaccatatagtgcaatgtgggggagact 612
Query: 61 atgggggagtattaattcatctgccactgtcaaacatgcactgctgtctactgtcttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atgggggagtattaattcatctgccactgtcaaacatgcactgctgtctactgtcttcat 552
Query: 121 tccgggctggaattcctatttcttctgcctattgttttctatgctacaaaactatatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tccgggctggaattcctatttcttctgcctattgttttctatgctacaaaactatatctg 492
Query: 181 aactgcttctatattcttgctgtgtgacttctattaaatacattttatgatatgtctctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aactgcttctatattcttgctgtgtgacttctattaaatacattttatgatatgtctctg 432
Query: 241 ggctgtagattattattccgtgagcaaacagcgtttataaatcatcagaggaagctcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggctgtagattattattccgtgagcaaacagcgtttataaatcatcagaggaagctcaga 372
Query: 301 ttcccctgggagaggggtgcaggcaacgggaggtctctggagctataaagcgatgaagac 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 371 ttcccctgggagaggggtgcaggcaacgggaggtctctggagctgtaaagcgatgaagac 312
Query: 361 ccagagtgacaatccccctggtggtggccattggacaaagcttgaacaaagtcgaagccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccagagtgacaatccccctggtggtggccattggacaaagcttgaacaaagtcgaagccc 252
Query: 421 aattcttccagcctctgaagggttgattaagtacacacggataattcagca 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aattcttccagcctctgaagggttgattaagtacacacggataattcagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
