BAC Information

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BAC

Clone NameMSMg01-349D13
Chromosome11 (Build37)
Map Location 6,411,907 - 6,412,197
singlet/doubletsinglet
Overlap geneMyo1g
Upstream geneXbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb
Downstream geneLOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349D13.T7 (MSMg01no349_d13.b1)MSMg01-349D13.TJ (MSMg01no349_d13.g1)
ACCAG461130AG461131
length762776
length of high quality
(start - end)
341 (36 - 376)310 (71 - 380)
definitionCHROMAT_FILE: MSMg01no349_d13.b1 PHD_FILE: MSMg01no349_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:46 2005CHROMAT_FILE: MSMg01no349_d13.g1 PHD_FILE: MSMg01no349_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACCT
GGATCCTGTGAATGGCAGTGCTCTTAACTACTGACCTACATGTCCAGTTC
AGCAGGATTATAAAAACCACTGTTGGCTACAAAAGAAATGAGTTAAGGAG
ATTAAAAAAAAAAATGAGTTAAATTGTCAGCAAGGAAAATGTGCCTGTTT
AGGAGACATTAAAGATATGCCAGAGCCCAAGTGGGTGGCAGCCTGTGTTC
CTATCATTCTAGAGTCTAAGACAAGACTTTTGTGAGTAAGAGGACAGCCT
GAGTTATACAGGCCAGCCTGTATAACTCAGTTAAGTTAGGCCCCTGTGAT
GGGGGTGGGGGTGGGAATGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGGTTGCCCTGGTGGAAAACTTGGCTTC
CAAGGTATTACCTTTCAAATCCTTCTCTGTGCTCTGGACACACATCATGG
AGGGACATTCTTGTTCTTTCTGCTTGAACCCTGTCTGCCCTGCTGGCGAC
AGAGCAATGGCAGACTTTGAAACTAGCATACCCCTAGCCCACTGCCTCCT
GGGTAAGCTGGGAGTCACACAGACAGGAAATCAGCACTAAGCTTTCTAGA
GGAGCTTCAGGCCAAAAGTCAGAGGATCAATTGGTGGGGAGGGTAATGGA
AGGGTGTGTTAANCNNNNAANATCTCTGGNAAAATGGGANGAAGTGGGGN
TGGAGAGGNTNNTATCTCCTTCCTGGACAGACCTAGCTCTGAGCCCTGCC
TGCCAGGTCTCTGGGGCCCTTGTTCTGCCGTGATTTCAATTGTCCCATCT
CTGCTATACCAGGCTCTTAAGGACCTGAGAAGCCCTGGCTTCTTGAGGCA
GGACCCACAGAAATGACTGGCTTAACCCCTTAACATTCTGTTCCTATAGG
AACCCTTCTAATGCCCCTGGCCCAAACCCACCAAAAAAAGGTGGCGGTCT
GGCTCAATAAACTCATTGTTTCCCCCATTCCATTACCCGTGCTCTTTGTT
ATTGTGCGCGCCCCCTTCTTTCTTTTTTTTCCTTGCTACTTATCTCCGAC
CTGTCTTCTCTTCGCTTCTCCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_d13.g1 MSMg01no349_d13.g1 CHROMAT_FILE:
MSMg01no349_d13.g1 PHD_FILE: MSMg01no349_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:46 2005
         (310 letters)



>mm_chr11_6411707_6412415
          Length = 709

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggttgccctggtggaaaacttggcttccaaggtattacctttcaaatccttctctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catggttgccctggtggaaaacttggcttccaaggtattacctttcaaatccttctctgt 432

                                                                       
Query: 61  gctctggacacacatcatggagggacattcttgttctttctgcttgaaccctgtctgccc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 431 gctctggacacacatcatggagggacattcttgttctctctgcttgaaccctgtctgccc 372

                                                                       
Query: 121 tgctggcgacagagcaatggcagactttgaaactagcatacccctagcccactgcctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgctggcgacagagcaatggcagactttgaaactagcatacccctagcccactgcctcct 312

                                                                       
Query: 181 gggtaagctgggagtcacacagacaggaaatcagcactaagctttctagaggagcttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gggtaagctgggagtcacacagacaggaaatcagcactaagctttctagaggagcttcag 252

                                                               
Query: 241 gccaaaagtcagaggatcaattggtggggagggtaatggaagggtgtgttaa 292
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 251 gccaaaagtcagagaatcaattggtggggagggta-tggaagggtgtgttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 709
Length adjustment: 9
Effective length of query: 301
Effective length of database: 700
Effective search space:   210700
Effective search space used:   210700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)