Query= MSMg01no349_j24.b1 MSMg01no349_j24.b1 CHROMAT_FILE:
MSMg01no349_j24.b1 PHD_FILE: MSMg01no349_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:17 2005
(526 letters)
>mm_chr11_92816198_92817119
Length = 922
Score = 868 bits (449), Expect = 0.0
Identities = 506/535 (94%), Gaps = 24/535 (4%)
Strand = Plus / Plus
Query: 5 gaattccctaagtcttgaagagagtgatactgatgtcttctttgggga-tccattctcag 63
|||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 195 gaattccctaagccttgaagagagtgatactgatgtcttcttt-gggagtccattctcag 253
Query: 64 cagtcaaagttctatgcacttttaccagttataaggctttgtattaaaggtcaaattt-- 121
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 254 cagtcaaagttctatgcacttttaccagttatgaggctttgtattaaaggtcaaatttat 313
Query: 122 --------tcgctacattttt-tgtgtcttttcatataccaatgtacccagttcttatct 172
||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct: 314 tcaaattgtcgctacatttttct-tgtcttttcatataccaatgtacctggttcttatct 372
Query: 173 tttctgaaaattttcatctttttctaatttgctttctataattttgttacttttttccta 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttctgaaaattttcatctttttctaatttgctttctataattttgttacttttttccta 432
Query: 233 aaaaatatctaaatgtctatacttaaatatttaattgtttgagcatgtgtttatttaact 292
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 433 aaaaatatctaaatgcctatacttaaatatttaattg----agcatgtgtttatttaact 488
Query: 293 tattcttttattactaaataattgttttcaagatttatttgcagttagttacttttaatt 352
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 489 tattcttttattactaaataattgttttcaagatttatttgcagtta----cttttaatt 544
Query: 353 tttt-aagattaatttacatttactttttaaaaattttaccaccctttgctatgttatat 411
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 545 ttttcaagattaatttacatttactttttaaaaattttaccacc-tttgctatgttatat 603
Query: 412 ttgcttctttattttttggagtgaaagtagcttatttatcatccactgaactttttaact 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttgcttctttattttttggagtgaaagtagcttatttatcatccactgaactttttaact 663
Query: 472 taaaatacagccatatagtaacagaaatattctatgtgtgaacatactccctctc 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 taaaatacagccatatagtaacagaaatattctatgtgtgaacatactccctctc 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 922
Length adjustment: 10
Effective length of query: 516
Effective length of database: 912
Effective search space: 470592
Effective search space used: 470592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_j24.g1 MSMg01no349_j24.g1 CHROMAT_FILE:
MSMg01no349_j24.g1 PHD_FILE: MSMg01no349_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:17 2005
(454 letters)
>mm_chr11_92978704_92979557
Length = 854
Score = 843 bits (436), Expect = 0.0
Identities = 448/452 (99%)
Strand = Plus / Minus
Query: 3 agtgcagtgcccacgctaatgtcctgcattttcatacgaattctgagaatcaaagtcagg 62
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 854 agtgcagtgcccacgctaatgtccggcattttcatacgaattctgagaatcaaagtcagg 795
Query: 63 tcctcttgcttgcaaagcaagcattttgctaattgagccactatcattcctgaactagct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tcctcttgcttgcaaagcaagcattttgctaattgagccactatcattcctgaactagct 735
Query: 123 ttttaaaatttttatttctttttgtttatttccattttacaaagtagaaagctgagggtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttttaaaatttttatttctttttgtttatttccattttacaaagtagaaagctgagggtt 675
Query: 183 cagaaggaggtcacttaccctgagcctaccacttcatcaaaactgcagcactcaggctca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cagaaggaggtcacttaccctgagcctaccacttcatcaaaactgcagcactcaggctca 615
Query: 243 gacttagcttctaattactcccagtgtaaactctgtggcttctgggggcatttaaacaaa 302
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 614 gacttagcttctaattactccctgtgtaaactctgtggcttctgggggcatttaaacaaa 555
Query: 303 tgtgtgttctttaccagtcaaagtggatcatgagttagaattgcttcagtgggttaaagg 362
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgtgtgttctttaccagtcacagtggatcatgagttagaattgcttcagtgggttaaagg 495
Query: 363 atccagtgagataagtagagagctctttgctcagtgtctggtagcttttactatcacaac 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 494 atccagtgagataagtagagagctctttgctcagtgtctggtagcttttactatcacagc 435
Query: 423 aaagtggctgtttggagtgaattgagaaatta 454
||||||||||||||||||||||||||||||||
Sbjct: 434 aaagtggctgtttggagtgaattgagaaatta 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
