Query= MSMg01no350_a24.b1 MSMg01no350_a24.b1 CHROMAT_FILE:
MSMg01no350_a24.b1 PHD_FILE: MSMg01no350_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:52 2005
(490 letters)
>mm_chr11_113049876_113050771
Length = 896
Score = 880 bits (455), Expect = 0.0
Identities = 481/493 (97%), Gaps = 8/493 (1%)
Strand = Plus / Plus
Query: 5 gaattctcctggcattc-gggtctcctgtcagcacaagatctgcgtcccaaatccaggat 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctggcat-ctgggtctcctgtcagcacaagatctgcgtcccaaatccaggat 263
Query: 64 gtgagctaccagcacaccaga------aaaaaaaaaagtctttcttacaaggaggggaac 117
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 gtgagctaccagcacaccagaggaaaaaaaaaaaaaagtctttcttacaaggaggggaac 323
Query: 118 cttggttaccttgtcttaagcaggcaccctccaaaggccacaagagtccaaatacccacc 177
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 cttggttaccttgtcttaagcaggcaccctccaaaagccacaagagtccaaatacccacc 383
Query: 178 cagggaaaggatggacgcggtacccactaaacctttaaataaaaagtgttcccgagcagt 237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 384 cagggaaaggatggacgcggtacccactaaacctttaaataaaaagtgctcccgagcggt 443
Query: 238 tgttctgtattttcactctattgacgtgactgtgcacaggcctaagaagttaaggggtct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgttctgtattttcactctattgacgtgactgtgcacaggcctaagaagttaaggggtct 503
Query: 298 tcctggagtgaggtgtccactcagatcagccccagcaatcccctgccttgtccgtggcct 357
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcctggagtgaggtgtccactcggatcagccccagcaatcccctgccttgtccgtggcct 563
Query: 358 gcaggaagcagctaaggaaagaggagacaccttcaatgtccacgctaaccaaagaggcat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcaggaagcagctaaggaaagaggagacaccttcaatgtccacgctaaccaaagaggcat 623
Query: 418 agatagagtcaccaggttctgagaagataaagcggcccaaggctatgctgtgatgtcaca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatagagtcaccaggttctgagaagataaagcggcccaaggctatgctgtgatgtcaca 683
Query: 478 gcaaaggacgggg 490
|||||||||||||
Sbjct: 684 gcaaaggacgggg 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 896
Length adjustment: 10
Effective length of query: 480
Effective length of database: 886
Effective search space: 425280
Effective search space used: 425280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_a24.g1 MSMg01no350_a24.g1 CHROMAT_FILE:
MSMg01no350_a24.g1 PHD_FILE: MSMg01no350_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:52 2005
(430 letters)
>mm_chr11_113164239_113165069
Length = 831
Score = 779 bits (403), Expect = 0.0
Identities = 424/431 (98%), Gaps = 1/431 (0%)
Strand = Plus / Minus
Query: 1 aaaggccaggctctcccagagcataggagaccacatgcgccccatgaggtcagtgtgcct 60
|||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct: 631 aaaggccaggctctcccagagcatgggagaccacatgtgccccgtgaggtcagtgtgcct 572
Query: 61 gtaaatgacagccaagccccaggcactgtcctcataggccagg-tctgtcaggtggcacc 119
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 571 gtaaatgacagccaagccccaggcactgtcctcataggccaggctctgtcgggtggcacc 512
Query: 120 atgcccccatgacatcttgatatcaactccaatatccctctcatgggaagaaaggtcatg 179
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 511 acgcccccatgacatcttgatatcaactccaatatccctctcatgggaaaaaaggtcatg 452
Query: 180 gcccatgagtcagtgagaatctgtccctttggctgccacagttgcagggaggagagcctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcccatgagtcagtgagaatctgtccctttggctgccacagttgcagggaggagagcctg 392
Query: 240 atgctctgcagacggggcaggagatagctctgatctttgagattgtggaggccaaagcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atgctctgcagacggggcaggagatagctctgatctttgagattgtggaggccaaagcaa 332
Query: 300 gcccatggtcaggcctccttgtctgtgcagtgagctcgagggaggtaacttctggttgtc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gcccatggtcaggcctccttgtctgtgcagtgagctcgagggaggtaacttctggttgtc 272
Query: 360 tcgtcatatggggccttttgagggtggagtctaggaaagagggctgcaggagcatcctta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcgtcatatggggccttttgagggtggagtctaggaaagagggctgcaggagcatcctta 212
Query: 420 tgccatgagac 430
|||||||||||
Sbjct: 211 tgccatgagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 831
Length adjustment: 9
Effective length of query: 421
Effective length of database: 822
Effective search space: 346062
Effective search space used: 346062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
