Query= MSMg01no350_b01.b1 MSMg01no350_b01.b1 CHROMAT_FILE:
MSMg01no350_b01.b1 PHD_FILE: MSMg01no350_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:52 2005
(592 letters)
>mm_chr11_79055649_79056638
Length = 990
Score = 882 bits (456), Expect = 0.0
Identities = 491/518 (94%), Gaps = 26/518 (5%)
Strand = Plus / Minus
Query: 77 gtgtgcagaaaggaagtagcagaaaggattat--tacttcaagaggaggaacgctgtctc 134
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 990 gtgtgcagaaaggaagtagcagaaaggattattctacttcaagaggaggaacgctgtctc 931
Query: 135 actaggcttgctgtaaacctcccagcttacatttactcttaacagtaagcattagaatac 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 actaggcttgctgtaaacctcccagcttacatttactcttaacagtaagcattagaatac 871
Query: 195 tgtccagaactacttgagaggctaaggcaagtagataggccagcctgggctacttaaagg 254
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tgtccagaactacttgagaggctaaggcaagtagataggccagc---------------- 827
Query: 255 tcagctttaacttcttggtgagacatgacctcaaagcaaaacccagcaaaacctgggttt 314
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 826 ------ttaacttcttggtgagacatgacctcaaagcaaaacccagcaaaacct--attt 775
Query: 315 agagccttctgcacagtctttggatgtttaaaatctaaactgtatgtgggcttactttta 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 agagccttctgcacagtctttggatgtttaaaatctaaactgtatgtgggcttactttta 715
Query: 375 cgtaatttaactgttttatgctgaaagtaactaatgatcatagtcaatttggaaaaataa 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cgtaatttaactgttttatgctgaaagtaactaatgatcatagtcaatttggaaaaataa 655
Query: 435 gtgttaaatcttgattatctaaaaatgttgtagttatattttcataaaatagtatatttt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gtgttaaatcttgattatctaaaaatgttgtagttatattttcataaaatagtatatttt 595
Query: 495 catctgtaatatggtttagtaacatacttgttgtttgccaacaaaattatttttggctgt 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 catctgtaatatggtttagtaacatacttgttgtttgccaacaaaattatttttggctgt 535
Query: 555 gaaaattctctttgcttgcagtatctgtttctcttcct 592
||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaaaattctctttgcttgcagtatctgtttctcttcct 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 990
Length adjustment: 10
Effective length of query: 582
Effective length of database: 980
Effective search space: 570360
Effective search space used: 570360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_b01.g1 MSMg01no350_b01.g1 CHROMAT_FILE:
MSMg01no350_b01.g1 PHD_FILE: MSMg01no350_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:52 2005
(475 letters)
>mm_chr11_79001831_79002705
Length = 875
Score = 878 bits (454), Expect = 0.0
Identities = 466/470 (99%)
Strand = Plus / Plus
Query: 1 agaaatggtgcagacttggggccgctcccccttatcaacccactcaaaacagaaggaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatggtgcagacttggggccgctcccccttatcaacccactcaaaacagaaggaaaa 260
Query: 61 ctagacactatttgctttcaaagctatctatgctctgccctgactttcagtgggagtgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagacactatttgctttcaaagctatctatgctctgccctgactttcagtgggagtgac 320
Query: 121 ctaggaagctttgagtggctctaagacccacagttagcatagggccgtctatttgcccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggaagctttgagtggctctaagacccacagttagcatagggccgtctatttgcccag 380
Query: 181 cggagataataaactttggtagttagccggccccttgccactgatggctagcctacagaa 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cggagataataaactttggtagttagccggcctcttgccactgatggctagcctacagaa 440
Query: 241 gagccgggccagccccactccttcttcctgggccctcggtgggtggggagaaaacaggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagccgggccagccccactccttcttcctgggccctcggtgggtggggagaaaacaggag 500
Query: 301 cgcagtcttcccaaggtgtgcatccaagcaaaccagttcccaagcagaggctgtgcttgc 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgcagtcttcccaaggcgtgcatccaagcaaaccagttcccaagcagaggctgtgcttgc 560
Query: 361 tccaagcagcaaggtgtgcagggaagctgttctgaggccagagctggaaaccattctact 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaagcagcaaggtgtgcagggaagctgttctgaggccagagctggaaaccattctacc 620
Query: 421 tcacatctgagtgccatgacagtgaatgcccactccatctcgtaggccct 470
|||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 tcacatctgagtgccaggacagtgaatgcccactccatctcgtaggccct 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
