Query= MSMg01no350_b09.b1 MSMg01no350_b09.b1 CHROMAT_FILE:
MSMg01no350_b09.b1 PHD_FILE: MSMg01no350_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:54 2005
(481 letters)
>mm_chr11_94261762_94262646
Length = 885
Score = 903 bits (467), Expect = 0.0
Identities = 479/485 (98%), Gaps = 4/485 (0%)
Strand = Plus / Plus
Query: 1 ggggagcctcgttgcttttcctattacacctaattttacagctttaactaaagataaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggggagcctcgttgcttttcctattacacctaattttacagctttaactaaagataaacc 260
Query: 61 taatgtagaattatttttaatactggtgagtaatgcttttatagtcttagggttaggggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgtagaattatttttaatactggtgagtaatgcttttatagtcttagggttaggggt 320
Query: 121 ggaaccagagggattgtctcaaaagacctcaagggataagaccagcagtggtgatagctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ggaaccagagggattgtctcaaaagacctcaagggataagaccagcagtggtaatagctg 380
Query: 181 gctgtgctcctggcatctgggagatagtgcaggggaggaggctctgggcttccaaactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtgctcctggcatctgggagatagtgcaggggaggaggctctgggcttccaaactca 440
Query: 241 gg----gtgcagaagggctggtttacatctttatctaactgccctttgtattcatcttcc 296
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagagtgcagaagggctggtttacatctttatctaactgccctttgtattcatcttcc 500
Query: 297 catttccaaatttggatcacctttatcaaatttagaataacgttgattggcctagagaaa 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 catttccaaatttggatcacctttatcaaatttagaataacattgattggcctagagaaa 560
Query: 357 attctcattactctttggatatattttaaaggtgggtttgccaggctgagacttatttgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attctcattactctttggatatattttaaaggtgggtttgccaggctgagacttatttgt 620
Query: 417 atctgcttatctgcattgtttttgcaaatggccttttttttattccatgtgtaaagcatg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctgcttatctgcattgtttttgcaaatggccttttttttattccatgtgtaaagcatg 680
Query: 477 cagga 481
|||||
Sbjct: 681 cagga 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 885
Length adjustment: 10
Effective length of query: 471
Effective length of database: 875
Effective search space: 412125
Effective search space used: 412125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_b09.g1 MSMg01no350_b09.g1 CHROMAT_FILE:
MSMg01no350_b09.g1 PHD_FILE: MSMg01no350_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:54 2005
(333 letters)
>mm_chr11_94443391_94444123
Length = 733
Score = 607 bits (314), Expect = e-178
Identities = 329/334 (98%), Gaps = 2/334 (0%)
Strand = Plus / Minus
Query: 1 aagactgttgggctgctaggcgtgagccggctggctggccccagagtatggtattttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aagactgttgggctgctaggcgtgagccggctggctggccccagagtatggtattttaag 300
Query: 61 tgctttttggagaccaggctgggccttgtagtctaggcaagtgctgtattgtcattcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgctttttggagaccaggctgggccttgtagtctaggcaagtgctgtattgtcattcctt 240
Query: 121 ctgtggcccttttacatttgacttccattttctttcttcttttttttttttttgatttat 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 239 ctgtggcccttttacatttgacttccattttctttcttc-tttttttttttttgatttat 181
Query: 181 ttatttattatatgtaagtacactgtagctgtcttcagatacaccagaaga-ggcgtcag 239
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 180 ttatttattatatgtaagtacactgtagctgtcttcagacacaccagaagagggcgtcag 121
Query: 240 atctcatttcggatggttgtgagccaccatgtggttgctgggatttgaactcaggacctt 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atctcattttggatggttgtgagccaccatgtggttgctgggatttgaactcaggacctt 61
Query: 300 tagaagagcagtcagtgctcttacccactgagcc 333
||||||||||||||||| ||||||||||||||||
Sbjct: 60 tagaagagcagtcagtgatcttacccactgagcc 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space: 234576
Effective search space used: 234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
