BAC Information

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BAC

Clone NameMSMg01-350M15
Chromosome11 (Build37)
Map Location 3,093,837 - 3,094,076
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC236604, Sfi1, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350M15.T7 (MSMg01no350_m15.b1)MSMg01-350M15.TJ (MSMg01no350_m15.g1)
ACCAG462317AG462318
length769777
length of high quality
(start - end)
240 (78 - 317)333 (88 - 420)
definitionCHROMAT_FILE: MSMg01no350_m15.b1 PHD_FILE: MSMg01no350_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:50 2005CHROMAT_FILE: MSMg01no350_m15.g1 PHD_FILE: MSMg01no350_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCAATAAXXXXXXXXXXXXXXXXXXXXXXXTATGCAAACGAGAGCG
CGGAATTCACTCATTAGCANAGAAATTCTTTAACTGCAGGGATCCCCCTG
CCTCAGCCTCCCACAAATGACTGTTACCAATAATTGCTTTTAAATCTTTG
GATTACAAAATTACCATTTGTAAATGGGCAAAACCCATATTTCTTGGGTT
TAATCTTTTTAAAAATTTTGAGTATGAATGTTTTGCTTGCATATAGGTCA
AACTTTAGCGCGACTTGGGAGTCACAACTGTTTTAAGAGCCACCGTGTGG
GTATTGGGAGTCTGGATGAATGTTTTTTGCATTTAACTGGTGAGTCATAT
CTCCTGCCCCTTGGTTTTCGTCTTCAGACACCCACCCACTAGTTTTCACT
GTTCTTAGTTTGATACCCCCCACTCTGTTCTGAAAGTTCTCTTTACAGAT
TCGGCTGTTTGAAGCGGAAATTACCGACGTGAGCCACCACGCTAATGAAA
AGAGATATTTTTTCCGTCTCACACCGGTTCCATGCCCAAGTTGTAACTAT
TGACCTTCCTCTCACAACCCTATAAACTTCCTCGTTAACAACATTTGTTA
CACCCTCAATCTTACTTTCTTATTTTTCCCCCTCTTTCCCATACAAATTT
CTTCTTCTTTTCTTTTTTTCTTCCACCCAACCCCGTTTTCCCTTCTTTCC
TCTCTTCCATCGCCTCTATTCCTCCCACCCCTTCCCTCCCCAGTATCCTT
CTTCGTCTTTTCCCCCCCG
TTCCGATGATATTGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATGTCCACTGTAGGACAT
GGAATATGGCAAGAAAACTGAAATCATGGAAATGAGAAACATCCACTTGA
CGACTTGAAAAATGACGAAATCACTGAAAAACGTGAAAAATGAGAAATGC
ACACTGTAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATG
AGAAATATACAATTTAGGACATGAAATATGGCGAGGAAAACTGAAAATGG
TGGAAAATTTAGAAATGTCCACTGTAGGACATTGAATATGGCAAGAAAAC
AGAAAATCATGGAAAATGAGAAACATCCACTTGACGACTTGAAAAATGAC
GAAATCACTGAAAAACGTGCAAAATGAGAAATGCACACTGTAGGACCTGG
ATTATGGCGAGAAAAGTGAAAATCACGGAAAATGAGAAATACACACTGCA
GGACGTGAAATATGGCGAGGAAAACTGAACAAGGTGGAAAATTTATAAAT
GTCCACTGTAGGACATGGAATATGGCAAGAATACTGAATAACCTGTCAAT
ATGACAAATATCTCCCTTCACCACTTTGTTAATGACCAAATCTTCTTATC
ACCTTCCTTTCCCGATCAATTGTCCTTCCGTTAGGACTCTTCTATTATGT
CTATATACACCTTATATAATATTCTCTTAATCCACAAATTTCTCCTTTTC
TTATTACCTGATACACTCGTCATATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_m15.b1 MSMg01no350_m15.b1 CHROMAT_FILE:
MSMg01no350_m15.b1 PHD_FILE: MSMg01no350_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:50 2005
         (240 letters)



>mm_chr11_3093637_3094276
          Length = 640

 Score =  418 bits (216), Expect = e-121
 Identities = 234/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttaactgcagggatccccctgcctcagcctcccacaaatgactgttaccaataattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctttaactgcagggatccccctgcctcagcctcccacaaatgactgttaccaataattgc 381

                                                                       
Query: 61  ttttaaatctttggattacaaaattaccatttgtaaatgggcaaaacccatatttcttgg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 ttttaaatctttggattacaaaattaccatttgtaaaagggcaaaacccatatttcttgg 321

                                                                       
Query: 121 gtttaatctttttaaaaattttgagtatgaatgttttgcttgcatataggtcaaacttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 320 gtttaatctttttaaaaattttgagtatgaatgttttgcttgcatataggtcaaacggga 261

                                                                       
Query: 181 gcgcgacttgggagtcacaactgttttaagagccaccgtgtgggtattgggagtctggat 240
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcgcgacttgggagtcacggctgttttaagagccaccgtgtgggtattgggagtctggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)