Query= MSMg01no351_a08.b1 MSMg01no351_a08.b1 CHROMAT_FILE:
MSMg01no351_a08.b1 PHD_FILE: MSMg01no351_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:10 2005
(519 letters)
>mm_chr11_59834805_59835724
Length = 920
Score = 948 bits (490), Expect = 0.0
Identities = 512/524 (97%), Gaps = 9/524 (1%)
Strand = Plus / Plus
Query: 5 gaattctccaggcctccaagcccgtagcggaactgctaagacatccaggggctggagaga 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattctccaggcctccaagcccatagcggaactgctaagacatccaggggctggagaga 256
Query: 65 tggctcagcggttaagagcacccactgctcttccgaagctcctgagttcaagtcccagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tggctcagcggttaagagcacccactgctcttccgaagctcctgagttcaagtcccagca 316
Query: 125 accatatggtggctcacaaccatccataatgatatctgatgccctcttctggggtgtctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 accatatggtggctcacaaccatccataatgatatctgatgccctcttctggggtgtctg 376
Query: 185 aacacagctacagtgtacttacatataataaataaataaatctttaaaaaaaagacatcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aacacagctacagtgtacttacatataataaataaataaatctttaaaaaaaagacatcc 436
Query: 245 agtctcatgggctaaactaccagaatctcagcctctctagtctaagatagctattgtttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtctcatgggctaaactaccagaatctcagcctctctagtctaagatagctattgtttt 496
Query: 305 gattacctgaatcacatcctataacctaatctaacaaatgccctttaatacacacacatt 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gattatctgaatcacatcctataacctaatctaacaaatgccctttaatacacacacatt 556
Query: 365 cattcattcattc--------tatcagttttgttcctttagacaaccttgggaatatgcc 416
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cattcattcattcattcattctatcagttttgttcctttagacaaccttgggaatatgcc 616
Query: 417 agggacacacaggggcccattaaggtgattgtaattatcatgatagcactgtggttgtgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agggacacacaggggcccattaaggtgattgtaattatcatgatagcactgtggttgtgg 676
Query: 477 gacactggg-aagcactgatcccattccccatttacctggttag 519
||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 677 gacactggggaagcactgatcccatcccccatttacctggttag 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space: 463190
Effective search space used: 463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_a08.g1 MSMg01no351_a08.g1 CHROMAT_FILE:
MSMg01no351_a08.g1 PHD_FILE: MSMg01no351_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:10 2005
(530 letters)
>mm_chr11_59986104_59987038
Length = 935
Score = 841 bits (435), Expect = 0.0
Identities = 454/463 (98%), Gaps = 5/463 (1%)
Strand = Plus / Minus
Query: 73 aggtcacagggcttgcagccgtgtgaaagatgcaatctccctatatccaccatgatgaag 132
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 935 aggtcacagggcttgcagccgtgtgaaagatgaaatctccctatatccaccatgatgaag 876
Query: 133 cctgacagtgagtggctgagggttcaagttccagctcctgtacacatacctggggaagct 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 cctgacagtgagtggctgagggttcaagttccagctcctgtacacatacctggggaagct 816
Query: 193 tgggcacttaacctcttcatgtttcatgctctcgagttgtaaaatattctaggcatccaa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgggcacttaacctcttcatgtttcatgctctcgagttgtaaaatattctaggcatccaa 756
Query: 253 ctggcagggctattgtgagggggtgggaggacagcttgatttgggctctttccagtcatg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ctggcagggctattgtgagggggtgggaggacagcttgatttgggctctttccagtcatg 696
Query: 313 cctgcccttccctacacagacagacctggccctgtgggggttcatcaggataccac---- 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cctgcccttccctacacagacagacctggccctgtgggggttcatcaggataccactgac 636
Query: 369 -tgactttctgagcatgtaggggatagaggcatggtgctgtctcggcctggctggtgagg 427
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 635 ttgactttctgagcatgtaggggacagaggcatggtactgtctcggcctggctggtgagg 576
Query: 428 catgggaagaagggagccctgatccagatgggggtggagcaggttaactagtgccacctc 487
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 575 catgggaagaagggagccctgatccagatgggggtggagcaggttatctagtgccacctc 516
Query: 488 tttggagcaccttctggcactacggatccaaataaaaattcca 530
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttggagcaccttctggcactacggatccaaataaaaattcca 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 935
Length adjustment: 10
Effective length of query: 520
Effective length of database: 925
Effective search space: 481000
Effective search space used: 481000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
