Query= MSMg01no351_l17.b1 MSMg01no351_l17.b1 CHROMAT_FILE:
MSMg01no351_l17.b1 PHD_FILE: MSMg01no351_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:03 2005
(501 letters)
>mm_chr11_83638937_83639836
Length = 900
Score = 938 bits (485), Expect = 0.0
Identities = 494/497 (99%), Gaps = 1/497 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagaggcttcaggaaaaagacacaggtcagacataggtacaaggacaatggaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagaggcttcaggaaaaagacacaggtcagacataggtacaaggacaatggaga 264
Query: 65 cctcttttccatatataatatccttaacactctccaaagggaagaacaggccacctttgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctcttttccatatataatatccttaacactctccaaagggaagaacaggccacctttgc 324
Query: 125 ctggatgaagcattgaaaaggagtcttcatctattcccttacaggtcagtgacccccccc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 ctggatgaagcattgaaaaggagtcttcatctattcccttacaggtcagtga-ccccccc 383
Query: 185 cccccggtgaataatgctaagatcgaggaccccatgctgagtgctcaaattgaacacaca 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccccctgtgaataatgctaagatcgaggaccccatgctgagtgctcaaattgaacacaca 443
Query: 245 gagcccaggtgaccttcctcatcgtgtgccctcctgggccagggactccatctccacgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 gagcccaggtgaccttcctcatcgtgtgccctcctgggccagggactccatctccacatg 503
Query: 305 ctcttataatgctgctgtggcactcacggccttaactcacaccagatcctttgagcactt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcttataatgctgctgtggcactcacggccttaactcacaccagatcctttgagcactt 563
Query: 365 ggcagtagcccaggccctccaaactcccttgttcctaaatagctgccattctatgaaagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggcagtagcccaggccctccaaactcccttgttcctaaatagctgccattctatgaaagc 623
Query: 425 tgtgagcacctaaattcttgggatggggaggacttccaagggatccagttggaaatccaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtgagcacctaaattcttgggatggggaggacttccaagggatccagttggaaatccaa 683
Query: 485 gtctttatgaattgtca 501
|||||||||||||||||
Sbjct: 684 gtctttatgaattgtca 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 900
Length adjustment: 10
Effective length of query: 491
Effective length of database: 890
Effective search space: 436990
Effective search space used: 436990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_l17.g1 MSMg01no351_l17.g1 CHROMAT_FILE:
MSMg01no351_l17.g1 PHD_FILE: MSMg01no351_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:03 2005
(488 letters)
>mm_chr11_83800027_83800914
Length = 888
Score = 928 bits (480), Expect = 0.0
Identities = 486/488 (99%)
Strand = Plus / Minus
Query: 1 agagcaaaatcgtaggggttaattggagaaaagattgcataaatatttaagcaaaatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agagcaaaatcgtaggggttaattggagaaaagattgcataaatatttaagcaaaatttt 629
Query: 61 aattagcacaatcaagcagcatccattttaagattaatgcttaaagtgttagcgtccgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aattagcacaatcaagcagcatccattttaagattaatgcttaaagtgttagcgtccgag 569
Query: 121 cggcggttggttaaacaaagtgtgccgagtgccccaggagctcaccactctcttcctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cggcggttggttaaacaaagtgtgccgagtgccccaggagctcaccactctcttcctttg 509
Query: 181 actgggtttgatctgaagtcttttctgcctctgcactggcgggaccactcacacatccat 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acagggtttgatctgaagtcttttctgcctctgcactggcgggaccactcacacatccat 449
Query: 241 ccacagcacccctgttatgggccattaaaccagggcagttcttactggatcctgggactg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccacagcacccctgttatgggccattaaaccagggcagttcttactggatcctgggacta 389
Query: 301 tggctttgtgcccagcatcaggagtgtttaattttatgtgttcctgcccggatgcactta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tggctttgtgcccagcatcaggagtgtttaattttatgtgttcctgcccggatgcactta 329
Query: 361 catcacaagacactaggagcttctcttccaaggaagggcctaaacaaacagcacgaagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 catcacaagacactaggagcttctcttccaaggaagggcctaaacaaacagcacgaagga 269
Query: 421 gtatttgtatattactgcatagaccaatcttttcttcatcccttcccgcccccatattct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtatttgtatattactgcatagaccaatcttttcttcatcccttcccgcccccatattct 209
Query: 481 caggggaa 488
||||||||
Sbjct: 208 caggggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
