BAC Information

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BAC

Clone NameMSMg01-352A07
Chromosome11 (Build37)
Map Location 52,076,235 - 52,244,277
singlet/doubletdoublet
Overlap geneTcf7, Vdac1, 9530068E07Rik
Upstream geneBC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a
Downstream geneLOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352A07.T7 (MSMg01no352_a07.b1)MSMg01-352A07.TJ (MSMg01no352_a07.g1)
ACCAG463250AG463251
length824798
length of high quality
(start - end)		179 (79 - 257)396 (81 - 476)
definitionCHROMAT_FILE: MSMg01no352_a07.b1 PHD_FILE: MSMg01no352_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:24 2005CHROMAT_FILE: MSMg01no352_a07.g1 PHD_FILE: MSMg01no352_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,076,235 - 52,076,413)(52,243,882 - 52,244,277)
sequence
NNNNNTTTTTTTTTTTTCNNCCGCTAAACNAACTCCCTATATCCAAAAGG
ATNNGNGNAATTNAAGGTTATTTCCGGTCTGCATAGTTCCAAGCCAGCAG
CATCCAGAGCTACATAGTATGTCTGTCCACTATGGGAGGAGAGACTAACT
GTGAGATGCATGGACACATGTCAGGCACATGCCACTAGTGCACAAACAGG
CTGTTGTCTCTCTGTCTGTGATCTGTCTCCCACCTACCACCTCATGACTC
TTCCCTCCCAGAACCCTTANTAAGTCCAGCCTCGTTCAGTGACTCCAGAT
CTCANCTCTCAATCTTCCCCTCGNCCTTATTTTTGTTCTTTGCCCCAAAA
AACCGGTTACCTCCTCATTGACTTCCAAAATGNNNGGGNNNTCTTTCCCC
TGTTAAAANNNNNNAGCGACCTTTGCCGGGCACACCCNNNNNNNNNNNTN
NNNNNNNNNNNNNNNCGTCTNNNNNNNNNNNNNTNCGGGCGGGCGCGGAG
GGGCGGAGGAGGGGGGGAGAAAGAGAAGAAGTGAGAGAGAGGAAGAGGGG
AGAAGAAAGGAAGAAGGGAGGAGGCGGAGGGGAAGCAGGCCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCNNNCNCNCCCNCCCCCCCG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGGAGCTATACTGACTT
CAGAACCAGAGATACTAGGGTGAAATGGAGGGTTGGCAGTGCATGGTGGG
ATCCTAAGCTCCTCCCAGGAGAGCAGCTAAGTCCCATCTGCAGAGATGAA
GTTGGGACTTGAAGGATGGAAAGAGGAGCCAGTGAAAGGAGACAGGGGTT
ATTCTAGGTGGGCAAAGGATGCCACTGGGTTCACCAAAGAAAGCTTCTTT
GTGACTGGGGATGTAGTTCAGTTGGTAAAGTGACTGCCCAGCATGCAGGA
AGCCCTGAGTCCAATCCCAAGTACCACATAAACTGGGTGTGGTGGCATAG
TGCTTAAAAGGTAGAGACTGGAGGAGGTAGAGACAGGAAGATCAGGAGTA
CAAGGACATCTTCTACACAGGGAGTTCCAGGTCAGCCTGTACTACTGGAG
CTTCTGTCTCCCAATAGATTAAAGAACTGCGATGAGGAGTAGCACCATTT
GCCCCTTTTCTTTTTTCCTTTTCTTTTCCCCTCTCGCCTCCCTTTCTCTC
CCCTTCTTCTTTTCGCCTATTCTTTTCCCCCTTTTTCCCCTCCTCTCGCT
CTTTTACATCCTCATTTTCTTTCTTTCCCTCTTTCCTATTCCTTTATCCT
TTTTTCTTTTCCTCCGCATTACCCCTCCTCCATTTTTCCTCCCCCTTTCC
CCTCCTCCTTTTATTCCTCTTTCCCCTATTTCGTTCCCTTATCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_a07.b1 MSMg01no352_a07.b1 CHROMAT_FILE:
MSMg01no352_a07.b1 PHD_FILE: MSMg01no352_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:24 2005
         (179 letters)



>mm_chr11_52076035_52076613
          Length = 579

 Score =  346 bits (179), Expect = e-100
 Identities = 179/179 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcatagttccaagccagcagcatccagagctacatagtatgtctgtccactatgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcatagttccaagccagcagcatccagagctacatagtatgtctgtccactatgggag 260

                                                                       
Query: 61  gagagactaactgtgagatgcatggacacatgtcaggcacatgccactagtgcacaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagactaactgtgagatgcatggacacatgtcaggcacatgccactagtgcacaaaca 320

                                                                      
Query: 121 ggctgttgtctctctgtctgtgatctgtctcccacctaccacctcatgactcttccctc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctgttgtctctctgtctgtgatctgtctcccacctaccacctcatgactcttccctc 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no352_a07.g1 MSMg01no352_a07.g1 CHROMAT_FILE:
MSMg01no352_a07.g1 PHD_FILE: MSMg01no352_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:24 2005
         (396 letters)



>mm_chr11_52243856_52244651
          Length = 796

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatggagctatactgacttcagaaccagagatactagggtgaaatggagggttggcagt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 422 ctatggagctatactgacttcagaaccagagatactagagtgaaatggagggttggcagt 363

                                                                       
Query: 61  gcatggtgggatcctaagctcctcccaggagagcagctaagtcccatctgcagagatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcatggtgggatcctaagctcctcccaggagagcagctaagtcccatctgcagagatgaa 303

                                                                       
Query: 121 gttgggacttgaaggatggaaagaggagccagtgaaaggagacaggggttattctaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gttgggacttgaaggatggaaagaggagccagtgaaaggagacaggggttattctaggtg 243

                                                                       
Query: 181 ggcaaaggatgccactgggttcaccaaagaaagcttctttgtgactggggatgtagttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggcaaaggatgccactgggttcaccaaagaaagcttctttgtgactggggatgtagttca 183

                                                                       
Query: 241 gttggtaaagtgactgcccagcatgcaggaagccctgagtccaatcccaagtaccacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gttggtaaagtgactgcccagcatgcaggaagccctgagtccaatcccaagtaccacata 123

                                                                       
Query: 301 aactgggtgtggtggcatagtgcttaaaaggtagagactggaggaggtagagacaggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aactgggtgtggtggcatagtgcttaaaaggtagagactggaggaggtagagacaggaag 63

                                               
Query: 361 atcaggagtacaaggacatcttctacacagggagtt 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 62  atcaggagtacaaggacatcttctacacagggagtt 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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