BAC Information

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BAC

Clone NameMSMg01-353A05
Chromosome11 (Build37)
Map Location 7,962,187 - 7,962,423
singlet/doubletsinglet
Overlap genenone
Upstream geneAdcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353A05.T7 (MSMg01no353_a05.b1)MSMg01-353A05.TJ (MSMg01no353_a05.g1)
ACCAG463997AG463998
length755807
length of high quality
(start - end)		556 (53 - 608)238 (83 - 320)
definitionCHROMAT_FILE: MSMg01no353_a05.b1 PHD_FILE: MSMg01no353_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:45 2005CHROMAT_FILE: MSMg01no353_a05.g1 PHD_FILE: MSMg01no353_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGCTCAGTTAGTATAATATTTGCTATATGTTTATCAT
ATATACCTTTAAAAGGTTGAGACACGTTCCTCTTATTACCAATTCCTTAA
GAGCTTTTACCATAAAGAGGAGTTGGATTCTGTCAGAAACCTTTTCTGCA
ACTTTTCTGCAACTTCTCAGACAATCATATGATTCTTGCTCTTAAATCTA
TTTATCTGATCTACTACATTTATTCACTTCCGTATGTTAGGCAATTCCTG
AATCCCTAAGAAACACTCAGATTAATTATGGTCACAGTGAATCACCTTTC
TCATATATCCTTGAATTCAGTTTGCATCTATTTTGTTGAGAAATGTTAGA
TACATGTATTCATGGAGCTTGATCTATTATCTCTATCTCTCTTTTTTTCT
TTTTTGCTGTTATCTGGTTTGAATTTTGGAGTAATATGATCAAACTCTTC
TATGANAATGGTTTAATATTTAAAAGATGGGTCTTCCCATATCAATTAAT
ATAATTAACATTGTCTCTATAGTCATGACATGGGGTCTAGCTCCCAAGCA
ATTTCAGATTCTATCAAGCTGACAGTTAAGTTTAATCTTCAGAGAGTAAT
TTATTCCACAATAAAACATATGATATTTCTCCACTAAATGCCTGCAACTA
ATATTCAACCTCCCCTTGCATGACCAAAATTATCCCATCTTGGTAATTTC
TTTCC

NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACGGCGAGCTTACTC
CTGAAGACGGCCCACAGTGAGCCAGCAGCTCTGAGACACTGTCTGGAGTA
GAACTCACTTACCAGGGAGCCGGTGCAGATCACAGAACACCGGATAGGAC
GTTCCATTCTTTCAGCCACATGTTCCTGGAACACCTGATGAATGAGTGGT
CTTCAGCCTTATTCGTGTCCCTACTCTGCCTCACTAGGATCCAATTCCAG
GGGTGTGGGTGTGGGGTGGNGNCTTTANTTTTCTGATTNTTGTNCNTNTG
TTTCCCTCTTTTGCCTTTTGCCTTCTCTGTGCCGATAGCCCTTTCGCTTG
TCGATTTTGTCCTCTTTTTTTGTTTTTTCTTCTTGTTTTCTTCCCTTTGC
GTTGACTCTTCCTCTGTGCATCTCCTTCCCTTTGTTTCTCCCGTTTTTTT
CACCTGGTTTTTTTCCAGTATCGTTCATTCCCTTATAGTCCTTTCTGGCC
TTTCCGCTTTTGTCCTACTCCTCTCTACTTCCTTCTCCTTCCCCTATTTT
CTCTTTTTCCCTTCTGTTTTCCTTCTTTCTCCTTTTTATTTTTCGTCTTT
TCTTCCTTTTTCCCCCCTCTTTTTCCATTTTCTCCACACCTCTCCTCCTG
CTATTATTTCCCTATCCGCTTTTTTTTTCCTTTCCCCCTCTCCTTCTATT
CGCCTTACTCGCCCGTCCTCTTTTACACGCGCTTTTATCCTTTCCTTTCT
TCCCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_a05.g1 MSMg01no353_a05.g1 CHROMAT_FILE:
MSMg01no353_a05.g1 PHD_FILE: MSMg01no353_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:45 2005
         (238 letters)



>mm_chr11_7961987_7962624
          Length = 638

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacggcgagcttactcctgaagacggcccacagtgagccagcagctctgagacactgt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 437 cagacggcgagcttactcctgaagacggcccatagtgagccagcagctctgagacactgt 378

                                                                       
Query: 61  ctggagtagaactcacttaccagggagccggtgcagatcacagaacaccggataggacgt 120
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 377 ctggagtagaactcacttaccagggagccagtgcagatcacataacaccggataggacgt 318

                                                                       
Query: 121 tccattctttcagccacatgttcctggaacacctgatgaatgagtggtcttcagccttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tccattctttcagccacatgttcctggaacacctgatgaatgagtggtcttcagccttat 258

                                                                    
Query: 181 tcgtgtccctactctgcctcactaggatccaattccaggggtgtgggtgtggggtgg 237
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcatgtccctactctgcctcactaggatccaattccaggggtgtgggtgtggggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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