BAC Information

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BAC

Clone NameMSMg01-353C10
Chromosome11 (Build37)
Map Location 31,859,573 - 32,027,304
singlet/doubletdoublet
Overlap gene4930524B15Rik, Nsg2, LOC669207
Upstream geneAsb3, Chac2, Stc2, 2310022M17Rik, Cpeb4
Downstream geneIl9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353C10.T7 (MSMg01no353_c10.b1)MSMg01-353C10.TJ (MSMg01no353_c10.g1)
ACCAG464100AG464101
length748776
length of high quality
(start - end)		551 (73 - 623)310 (81 - 390)
definitionCHROMAT_FILE: MSMg01no353_c10.b1 PHD_FILE: MSMg01no353_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:56 2005CHROMAT_FILE: MSMg01no353_c10.g1 PHD_FILE: MSMg01no353_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,859,573 - 31,860,123)(32,026,996 - 32,027,304)
sequence
CCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATCTGTGTCCCCCAGGGAGGCTATCTTCCATGCAGGGTGCA
GACCTTCCAGTATAGCTGTTGTAGGATCTTTTAATCCCTGACCCATGATC
TGTAAGCAATACTTATCAGTTCTCCATGGTGAACTTTGGTGGAATCCAGC
TTTGGTTTGTCATTGAGACCTTAGAAGGAGTTTCCTAGTCACCAACTCCC
TCCTCCACCCCCAACTCCCTTCCCAGAGAGAAAATTCTTGCCACAGTAGG
TTATTTATCAAAGCACAGATGCCTTCCTCTCCTTTCCTTCCTCCATTAAC
TGCCAATAGCTCTCAGGGTGGGGTGAGGCCTCAGGAGCCCCTAGCCCATC
CAGGACAGAATGTCAATGAGCCCAAGCTGGTGCAGATAGTCACAAACATT
GTGAGTTCTAAGTGCAAAGGTTATGTTACGTCTGGAAGGCAGCTATCCCC
ATCCCTCCCCTCTCTTCTGAACTCTCCAATGGTGCTGATCTAAAACCAGA
TCTTAACCTGATCAAGGACCTGCATCTTCATTATTGCTGTGACAAAGACA
CTATGACTAAGGCAACTTATAGAAGACATCATTTAATTGGGGGCTTGCTT
ACAACTTTGGAGGGAGAGTGCATGACCATCATGGTGAAAGCCATGGCAGC
TAGGATGTCCGCATACTATTGGAGAAACAGTTGAGAGTTTACTTCTGA

TTCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTCTGGAGGCGACTATGG
ACCGTCCTCAATGTGGACAGTGGTGGAAGCTCACATAACTCCTTCTGGTA
CTTTCTGACTAGTCATCTTAAAGCCCTTTAAGATGCCTTACTCAGGCTTT
GTTGCATAGATAGGCCTGCAGGCCCAGGGATTTGAAGAGGCTGAGGAAGG
AAGATCACAAATTTAAGGGCAGCTCAAGCTCCAGAGCCAGTTCAAGGCCA
GACAAGGTAACAACTTAGTGGGACCTTGTCTCAAACAGAAAAGTGTAAAG
AGGGTGTGTGTGTGTGGGTGCTGGGGTGGTAGTGAGGTGCCGTCCCTTTT
TTTTTCCCCTTTTTCCCGTTTCTTCCTCTCCCTTTTTTTTCCTTTTCCTT
CTTTCCTTCCCCTTTTCTCCTTCTTCTTTTCCCCTTTTTCCTTCTTCCTT
TCTCCTTTTTCCCTCCCTCCCCTTCTTCCTTCCTCTTTTCTTCCTCCCCT
CCTTTCCCTTTCCTCCCCTTTTCTTCCCTTTCCCCTTCTTCTTCCCTTCT
CTCTTTCCTTTCCCTTTTTTTCCCCTTCCCTTCCTCTTTTTTTCTCCCTT
CTCCCCCTCCCTTCCTTTCCTTTTCTTTCCTTCCTTCCCCCTTTTTCCCC
TTTTTTCTTTCCCTTCCCCTTTCCCTTTCCCTCTCCCCTTTTTTTCTTTT
CTCTTCTCTTCCCCTTATTCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_c10.b1 MSMg01no353_c10.b1 CHROMAT_FILE:
MSMg01no353_c10.b1 PHD_FILE: MSMg01no353_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:56 2005
         (551 letters)



>mm_chr11_31859373_31860323
          Length = 951

 Score = 1058 bits (547), Expect = 0.0
 Identities = 550/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaggctatcttccatgcagggtgcagaccttccagtatagctgttgtaggatctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggaggctatcttccatgcagggtgcagaccttccagtatagctgttgtaggatctttt 260

                                                                       
Query: 61  aatccctgacccatgatctgtaagcaatacttatcagttctccatggtgaactttggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccctgacccatgatctgtaagcaatacttatcagttctccatggtgaactttggtgg 320

                                                                       
Query: 121 aatccagctttggtttgtcattgagaccttagaaggagtttcctagtcaccaactccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatccagctttggtttgtcattgagaccttagaaggagtttcctagtcaccaactccctc 380

                                                                       
Query: 181 ctccacccccaactcccttcccagagagaaaattcttgccacagtaggttatttatcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccacccccaactcccttcccagagagaaaattcttgccacagtaggttatttatcaaa 440

                                                                       
Query: 241 gcacagatgccttcctctcctttccttcctccattaactgccaatagctctcagggtggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacagatgccttcctctcctttccttcctccattaactgccaatagctctcagggtggg 500

                                                                       
Query: 301 gtgaggcctcaggagcccctagcccatccaggacagaatgtcaatgagcccaagctggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgaggcctcaggagcccctagcccatccaggacagaatgtcaatgagcccaagctggtg 560

                                                                       
Query: 361 cagatagtcacaaacattgtgagttctaagtgcaaaggttatgttacgtctggaaggcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagatagtcacaaacattgtgagttctaagtgcaaaggttatgttacgtctggaaggcag 620

                                                                       
Query: 421 ctatccccatccctcccctctcttctgaactctccaatggtgctgatctaaaaccagatc 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 ctatccccatccctcccctctcttctgaactctccaatggcgctgatctaaaaccagatc 680

                                                                       
Query: 481 ttaacctgatcaaggacctgcatcttcattattgctgtgacaaagacactatgactaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaacctgatcaaggacctgcatcttcattattgctgtgacaaagacactatgactaagg 740

                      
Query: 541 caacttataga 551
           |||||||||||
Sbjct: 741 caacttataga 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_c10.g1 MSMg01no353_c10.g1 CHROMAT_FILE:
MSMg01no353_c10.g1 PHD_FILE: MSMg01no353_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:56 2005
         (310 letters)



>mm_chr11_32026972_32027681
          Length = 710

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctctggaggcgactatggaccgtcctcaatgtggacagtggtggaagctcacataact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atctctggaggcgactatggaccgtcctcaatgtggacagtggtggaagctcacataact 274

                                                                       
Query: 61  ccttctggtactttctgactagtcatcttaaagccctttaagatgccttactcaggcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccttctggtactttctgactagtcatcttaaagccctttaagatgccttactcaggcttt 214

                                                                       
Query: 121 gttgcatagataggcctgcaggcccagggatttgaagaggctgaggaaggaagatcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gttgcatagataggcctgcaggcccagggatttgaagaggctgaggaaggaagatcacaa 154

                                                                       
Query: 181 atttaagggcagctcaagctccagagccagttcaaggccagacaaggtaacaacttagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atttaagggcagctcaagctccagagccagttcaaggccagacaaggtaacaacttagtg 94

                                                                       
Query: 241 ggaccttgtctcaaacagaaaagtgtaaagagggtgtgtgtgtgtgggtgctggggtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ggaccttgtctcaaacagaaaagtgtaaagagggtgtgtgtgtgtgggtgctggggtggt 34

                    
Query: 301 agtgaggtg 309
           |||||||||
Sbjct: 33  agtgaggtg 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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