BAC Information

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BAC

Clone NameMSMg01-353E21
Chromosome11 (Build37)
Map Location 95,986,079 - 95,986,486
singlet/doubletsinglet
Overlap geneTtll6
Upstream geneDlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52
Downstream geneHoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353E21.T7 (MSMg01no353_e21.b1)MSMg01-353E21.TJ (MSMg01no353_e21.g1)
ACCAG464215AG464216
length763798
length of high quality
(start - end)		552 (51 - 602)405 (81 - 485)
definitionCHROMAT_FILE: MSMg01no353_e21.b1 PHD_FILE: MSMg01no353_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:08 2005CHROMAT_FILE: MSMg01no353_e21.g1 PHD_FILE: MSMg01no353_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCTGACTCTCGGAGATTCTCCAAATACCTAAAAGTCACA
CTCATATAAGAATTTATCAAGGCCTAGGAAATAGGGGGTTTGTGGTATTG
CATTATTCATGAGAAGGTCTGCTAGAGCAGAAACCCCTGGTGCTAGCCTT
CACAAGGCTCAAAGGAGTAGCAAAATTCTCACTAGGGTGTGAAATCCTTA
CCTGTCATTAAGCTGACCCTAGGCAGGACTGCTTTATCTTCACTGTAAAC
ATTTACCTGGTTCCTGTAAGTCCCTTTGTAGTCATTCCTTTGTTTTGTGT
CAGGTAACTTCAATGTACTTTGCCTGCTGTGACTTCCGACCCCTTTTATT
TTCTGTACTCTATAAGACTTTGTGACCATACATTCAGATTTTACACAACC
TTGCCTGTTGATCTGTCTGTCATTCACCGACTCCTTGCCCACCTGCGAAT
AGAGACCTTTTCCACGCAGACAAAGGGACCCAGAGGGTCTGTGACACTCT
TCTTTCTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTT
CTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCATCTTCTTCTTCTT
CTTCTTCTCCCTTTTCTTCTTCCTCCTCCTCCTCTTTCAAGAACATTTAT
TTACCTTAATGAGACTAACCTTCCGTTATTTGTAAAATCCCCCTAATAGC
GCTTCCCTTTTCG

NTTTGGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACAC
AGAGAAATTATGTCTCAGAAAAACAAGGAAGAAAGAACTGGAAAGCGAAT
GGAGGCATACATGGAGACACGGGGTTATTCCAGGCAATAAACAATAAACA
ACAACAACAACAACAGAACAAAACTGCTTTCTGACTGAAAGGATTCTTTG
GACAAAGGAAGAAAAATGATATAGAAAGGGACCCGGCGAGAGGGAGGGGC
GAGGGTGTGCAGTGTGTCCCAGAGATGGTTGGTATCTAAGAGATTGCCTC
CAGGAGGCGTGAGGTGTGGAAAACAGTACCGGAGACAGAGAAGTGATGCA
CTCAACAGAGCCTAGGGTTCCTGAGGGAGACACCCTGCTTCCGAGCTTCC
TTATCCGCGATGCTACAGCCCCGGCTCTTCCCGACTGGGCGGNTCAGATC
TCCCCCAACCACCCTACTACTAACCACCCTACTACTACTAACTTTAACCC
GGCCCTTTCTTACTCCGAGNAAGGAGGCCAGGTTCCCCCTTGGGTGGCCC
ACCTCCGGGTAACGGGGACCCCAACCTGGATCCCTCCCTAAATTCTGATA
CTCCCGGGCCCCCATATTTGCCAATAGGAGCCCCCCAACTTTTCCATATG
CCCCCTGTGTAAGGGGTCCCTTTTCCTTCCCCTAAAACAATAATAAATAC
CCCTCCCCCCCCCTACAATAACCCCCTTTTNTCTTCTCTTCTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_e21.g1 MSMg01no353_e21.g1 CHROMAT_FILE:
MSMg01no353_e21.g1 PHD_FILE: MSMg01no353_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:08 2005
         (405 letters)



>mm_chr11_95985833_95986640
          Length = 808

 Score =  774 bits (400), Expect = 0.0
 Identities = 405/408 (99%), Gaps = 3/408 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctacacagagaaattatgtctcagaaaaacaaggaagaaagaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 caggacagccagggctacacagagaaattatgtctcagaaaaacaaggaagaaagaactg 595

                                                                       
Query: 61  gaaagcgaatggaggcatacatggagacacggggttattccaggcaataaacaata---a 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 594 gaaagcgaatggaggcatacatggagacacggggttattccaggcaataaacaataaaca 535

                                                                       
Query: 118 acaacaacaacaacaacagaacaaaactgctttctgactgaaaggattctttggacaaag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acaacaacaacaacaacagaacaaaactgctttctgactgaaaggattctttggacaaag 475

                                                                       
Query: 178 gaagaaaaatgatatagaaagggacccggcgagagggaggggcgagggtgtgcagtgtgt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaagaaaaatgatatagaaagggacccggcgagagggaggggcgagggtgtgcagtgtgt 415

                                                                       
Query: 238 cccagagatggttggtatctaagagattgcctccaggaggcgtgaggtgtggaaaacagt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cccagagatggttggtatctaagagattgcctccaggaggcgtgaggtgtggaaaacagt 355

                                                                       
Query: 298 accggagacagagaagtgatgcactcaacagagcctagggttcctgagggagacaccctg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 accggagacagagaagtgatgcactcaacagagcctagggttcctgagggagacaccctg 295

                                                           
Query: 358 cttccgagcttccttatccgcgatgctacagccccggctcttcccgac 405
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cttccgagcttccttatccgcgatgctacagccccggctcttcccgac 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 808
Length adjustment: 9
Effective length of query: 396
Effective length of database: 799
Effective search space:   316404
Effective search space used:   316404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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