BAC Information

Click to search

BAC

Clone NameMSMg01-353H08
Chromosome11 (Build37)
Map Location 18,472,065 - 18,472,166
singlet/doubletsinglet
Overlap genenone
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneMeis1, LOC635455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353H08.T7 (MSMg01no353_h08.b1)MSMg01-353H08.TJ (MSMg01no353_h08.g1)
ACCAG464331AG464332
length774795
length of high quality
(start - end)
102 (192 - 293)61 (164 - 224)
definitionCHROMAT_FILE: MSMg01no353_h08.b1 PHD_FILE: MSMg01no353_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:20 2005CHROMAT_FILE: MSMg01no353_h08.g1 PHD_FILE: MSMg01no353_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATGATTAGCTTGAGATTGTGTTCACAGTGATAGAAGCCT
GCTTTGGTTACTCTGTACACAGAGTCAGTATACACAGGCTGAAAGTGAGA
ACAGATATATCTTCTAAGGGTGGCACACCCTCACCTTCCACAAGCACAGC
CCTGCCTCTTAAAACACCCCTCCTCCCGAAGTCTTCAGTAGACACAAGAA
GCTGAAGTGTAAGCTCATGAAAACAAGGTCAAGAAAGACATTTTAGATTC
AATACGTAGATAGAGATGTGGATAGAGAACTGGAGGAAGGGGCCAGGAAA
GTGATCAGGAATGGGGCTCTGGAAAAGGTGGAGGTCAGGAACGCCTGCTG
GAGGGAGCTGAAGGATCTTTGTGAGGCAATGAGCGCTGGGGTTCATGAAG
GAGCAGTGCATAAAGGAAGGCCCAGGAAAGTCAGAGAAACTCAACTTGTA
TACTATCAACTTCACTGTTTTGTCGAGTATCTTGGACTTAAAGAACTGGT
CAGGCGATACCCAAAACTCTCCCTTATGTTTCCTTCTCTTAAACGCTTGT
ATGTGAACCTTTGGAGAATTGTTACACCCAACTTTATTAACCTGCCTCCC
TCATTAAACACTCTCCCATATTTTCGTTTGCCCCCCCCCCCGTCTTGAAT
CTGGAATACACATCCCTTGCTAGTTTTCTCCATCCTTTGTAAACCCTCCT
AACCCCCGCCTCCCCTTTTTTACG
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTGGCAGGGGACTGAA
AGGAAGACCAGAAACCTGTGGATCTGCGGCCAAAGTTTTGCTGAACACTT
TGTTCACAGATGTTTTCAAGGGAACCGATCTTGGTTAAATACCAGCTTTT
TTCCCTCTTCACTTACGGACTGAAGACACTGGAAGCCTTTCTTGAACAGA
CAGCATTTATATTGTGTGATAAGCTTGCTTGATGGCTACGTTTGCCGGAA
TTCTTGAAACTGCTCAGAACCCAGAAGACAAATGACTTTTTTGGATGAGA
GTATATCGTACGCGGCCATCCAGATTGAGAATTATGAGACGCACTGACTC
ACTGCTATATATGAATGACGATATGTCATTCCGGTGCCTCCCACATTACA
GACATCTGAACACATTTACACCTTGTCCCACTTTACATGTCACCAATTTT
TGTGAGCCTACTACCCCCTTTCCTCCACCAACCCCTGCCGAAACGAATTC
TCTTACCCTTATACCGCAATTTTTACCGCGTCCCTAATATTGTTATCTCT
TTCCTTCGATATTTTTCCACTTTTTCCCCTAACCCATGTCTCTCCTGTTC
ATTTTCCCCCTTTCCATTCCCTTTTTTTCCCCCTTTTTCCCCTTTTTCCC
CCCTTCCCCTTCCCCTTTTCCCATTTCTTTTCCCTTTGCTTTCCCCCTTT
CTCTCCCCCTTTATTCCTTTCCCCTTCTTTCCCCCCTTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_h08.b1 MSMg01no353_h08.b1 CHROMAT_FILE:
MSMg01no353_h08.b1 PHD_FILE: MSMg01no353_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:20 2005
         (102 letters)



>mm_chr11_18471865_18472366
          Length = 502

 Score =  190 bits (98), Expect = 3e-53
 Identities = 101/102 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcacagccctgcctcttaaaacacccctcctcccgaagtcttcagtagacacaagaag 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aagcacagccctgcctcttaaaacacccctcctcccaaagtcttcagtagacacaagaag 260

                                                     
Query: 61  ctgaagtgtaagctcatgaaaacaaggtcaagaaagacattt 102
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaagtgtaagctcatgaaaacaaggtcaagaaagacattt 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)