BAC Information

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BAC

Clone NameMSMg01-353N22
Chromosome11 (Build37)
Map Location 69,909,107 - 69,909,515
singlet/doubletsinglet
Overlap geneAsgr2
Upstream genePer1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1
Downstream geneMgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353N22.T7 (MSMg01no353_n22.b1)MSMg01-353N22.TJ (MSMg01no353_n22.g1)
ACCAG464641AG464642
length782799
length of high quality
(start - end)		415 (49 - 463)398 (90 - 487)
definitionCHROMAT_FILE: MSMg01no353_n22.b1 PHD_FILE: MSMg01no353_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:51 2005CHROMAT_FILE: MSMg01no353_n22.g1 PHD_FILE: MSMg01no353_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTCTAAAATTGCGGGCGCTATACGACTCCTATATGTAGAGGATC
CGCGGAATTCCAACTTTCCATACCAATGCCTGTCACCTTCCTTCACGACA
GCCGTACTTAGGACCCCAACTTAACCTAGCAAGGATATGCTTCTGAGTTC
TCCCCAACCCCAAGCCCCTAAGCAGAGCCTTCCCTGCCTCTCACCTCCCT
GACACTCTCCCGAAACCCACGGCCCTCTCTGCTGTGATGGGAATGGACCT
CTCGGTCTGATCTCCAGGGCAGCAACGTTGGGAGGTAGAACCTGAATGAA
TGGTGATTAGGTTTTGAGGGCTCTCCCTCGTCAGTGGATTATTGACAGTG
CAAAATAGCATTTATTAAAGGCTTCGTCTTTGGTGTCCCCTTCACCCTCC
CTGGGGTCTCCTGTTTCATGTTGGTGCCCTGACAGACACAGCCCTCTGTT
CTGGGCTTCCTAGACTCAAGAACCATGCTCCAGTACGTCCCTGGTATAAG
TTTCCTAGTCAGATGCATTCTGTTTTAGCATCCCCGGAAGGTACAGAAAA
TATTCCACCAAAAAGAACTTTTTGACCCAATCTCCCCCCGCTGGAAGACC
CCAACTTAAATTCCTGAAGGGTTTGGCTAGAATGGTCCCACCAGAAAACA
CCCCCCTGGATCCCATTTAACCCGGGGCCCATTAGACCCCATACCTGTCC
GCCCATAATAAAACCCCCTTTGACACCCCATTGGGTTGGCGTTATTCTAT
CTCTCCGAACCCTTTTTCTTCCTCTTAAAACG

NNNNNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGGTCTGT
ATTAACAGCTCTAGGTTAGTCAGGGTTAACTCTATAGTAAAACTCAGGCA
AAAAAGAATTACTAAAAGAGCTGGTCAGTGGTGGCACATGCCTTTAATCC
CAGCACTCCGGAGACAGAGGCAGGCGGATTTCTGCGTTTGAGACCAGCCT
GGTCTACAAGGTGAGTCCCAGGACAGCCAGGGCTACGCAGAGAAACCCTG
TCTTGAAAACAAACAAACAAACAAACAAACAAAAAGAAAGAAAAAGATAT
CCCAGAAGAAACTGAAGAAACAAAAACTCATGACAGGAATAAATTCAGCA
GAAAATAAATGCAGATAAAGTAAGAAAGGAAGGAAGGAAGAAAAGAATGA
AAGGAAGGAAGGAAGGAAAGAGAGAGAAAGAGAAAGAGAAAGATAGAAAG
AAAGAAAGACAGAAAGATCGAAAGACCGACCGACAGAATGACAGACAGAC
AGAAAGAACGAATGAACGAACGAATCGAACGAATTACCTGATGAATGAAC
GAAACTTGCTTTATTTTTCCGGCCCTTGGACGTAAACTGTAAATTGAGTT
CCCTTTGGAGCCTCCTCTATACCATTTTTTGGTTGGTTATTCCACAAAAA
CCCCCATTCCCCTAAACCTTTTCCCTATCAAATTGCCTTTCTTCTTCCCC
ATTTTGTTCTTGTTTTGTACCTTTCCCCTTCTGTCCCCCCCTCCATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_n22.b1 MSMg01no353_n22.b1 CHROMAT_FILE:
MSMg01no353_n22.b1 PHD_FILE: MSMg01no353_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:51 2005
         (415 letters)



>mm_chr11_69909107_69909921
          Length = 815

 Score =  768 bits (397), Expect = 0.0
 Identities = 406/409 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccaactttccataccaatgcctgtcaccttccttcacgacagccgtacttaggac 66
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gaattccaattttccataccaatgcctgtcaccttccttcacgacagccgtacttaggac 350

                                                                       
Query: 67  cccaacttaacctagcaaggatatgcttctgagttctccccaaccccaagcccctaagca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cccaacttaacctagcaaggatatgcttctgagttctccccaaccccaagcccctaagca 290

                                                                       
Query: 127 gagccttccctgcctctcacctccctgacactctcccgaaacccacggccctctctgctg 186
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 289 gagccttccctgcctctcacctccctgacactctcccgaaaagcacggccctctctgctg 230

                                                                       
Query: 187 tgatgggaatggacctctcggtctgatctccagggcagcaacgttgggaggtagaacctg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgatgggaatggacctctcggtctgatctccagggcagcaacgttgggaggtagaacctg 170

                                                                       
Query: 247 aatgaatggtgattaggttttgagggctctccctcgtcagtggattattgacagtgcaaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aatgaatggtgattaggttttgagggctctccctcgtcagtggattattgacagtgcaaa 110

                                                                       
Query: 307 atagcatttattaaaggcttcgtctttggtgtccccttcaccctccctggggtctcctgt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 atagcatttattaaaggcttcgtctttggtgtccccttcaccctccctggggtctcctgt 50

                                                            
Query: 367 ttcatgttggtgccctgacagacacagccctctgttctgggcttcctag 415
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  ttcatgttggtgccctgacagacacagccctctgttctgggcttcctag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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