Query= MSMg01no354_b20.b1 MSMg01no354_b20.b1 CHROMAT_FILE:
MSMg01no354_b20.b1 PHD_FILE: MSMg01no354_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:10 2005
(576 letters)
>mm_chr11_41277313_41278288
Length = 976
Score = 1060 bits (548), Expect = 0.0
Identities = 566/572 (98%)
Strand = Plus / Minus
Query: 5 gaattcttcaatcccacttagaaggaggaatgcaataatcaggaaggcagatagaaggag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaattcttcaatcccacttagaaggaggaatgcaataatcaggaaggcagatagaaggag 541
Query: 65 ggacctgggtgggagagtggagggggaaaggaaaaggggcacaggatcaggaagacagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggacctgggtgggagagtggagggggaaaggaaaaggggcacaggatcaggaagacagaa 481
Query: 125 tctatatggaaacaacaggtgtcattgcaatcagctagcatgggcatactctgcccagac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tctatatggaaacaacaggtgtcattgcaatcagctagcatgggcatactctgcccagac 421
Query: 185 ctttcctcccatgaaagctagttgttgagacaaaaatagtacaacatgaatcacatgtgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctttcctcccatgaaagctagttgttgagacaaaaatagtacaacatgaatcacatgtgg 361
Query: 245 cttgttaagttaaacataaggtttccatgtacttaacagtcactttgctgaccagtttta 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cttgttaaattaaacataaggtttccatgtacttaacagtcactttgctgaccagtttta 301
Query: 305 tgacatcttaacacaaactgagtcactttagaagggggaacatcaattaaaaaaatattc 364
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 300 tgacatcttaacacaaactgagtcactttggaaggaggaacatcaattaagaaaatattc 241
Query: 365 cctttggattggcctgtgagcaagccgttggggctttttcttgattgatgattgatgagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cctttggattggcctgtgagcaagccgttggggctttttcttgattgatgattgatgagg 181
Query: 425 gagggcctagctcattgtgaatggcaacattcccaagttgtgggtactgggtgctataag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gagggcctagctcattgtgaatggcaacattcccaagttgtgggtactgggtgctataag 121
Query: 485 aatccaggctgagcaagtcgtggggagcaagccaataagtatccctcctccatggtttca 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 120 aatccaggctgagcaagtcttggggagcaagccaataagtatccctcctccatggcttca 61
Query: 545 cttcagctccttcctctatatttctacctgcc 576
||||||||||||||||||||||||||||||||
Sbjct: 60 cttcagctccttcctctatatttctacctgcc 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_b20.g1 MSMg01no354_b20.g1 CHROMAT_FILE:
MSMg01no354_b20.g1 PHD_FILE: MSMg01no354_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:11 2005
(482 letters)
>mm_chr11_41074253_41075136
Length = 884
Score = 913 bits (472), Expect = 0.0
Identities = 481/484 (99%), Gaps = 2/484 (0%)
Strand = Plus / Plus
Query: 1 ttttagtacatagtactatagggaaagaca-cacatagaaaaggaagcctggctaagata 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttttagtacatagtactatagggaaagacaacacatagaaaaggaagcctggctaagata 260
Query: 60 caaaaccagcaacagtttgcttcgctgccattttgcaaactaccaaatcttttcaataga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaccagcaacagtttgcttcgctgccattttgcaaactaccaaatcttttcaataga 320
Query: 120 cagaaaagtacagatgggagtgaatcttttatactatctacactaagtaaatggtgattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaaagtacagatgggagtgaatcttttatactatctacactaagtaaatggtgattt 380
Query: 180 ttttttcttcaaattttcattcctctgtgggcatgaggttttttgtcttttctggttctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttcttcaaattttcattcctctgtgggcatgaggttttttgtcttttctggttctt 440
Query: 240 cttatatttatccactcttttttgttgttgtactatgtttttgtcaactgatttctattt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttatatttatccactcttttttgttgttgtactatgtttttgtcaactgatttctattt 500
Query: 300 tcacatcttaaatatgtaaactttcaggaatacatcccttttctgaagccgcttcatggg 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacgtcttaaatatgtaaactttcaggaatacatcccttttctgaagccgcttcatggg 560
Query: 360 aacctgcaaactcctttccaaaccttgcagatgctacagtgttcttgccctttagctgg- 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacctgcaaactcctttccaaaccttgcagatgctacagtgttcttgccctttagctggg 620
Query: 419 tattaagagctcatctgctaaaaagtgggcagttttgtagcccaaatgccatgattacct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattaagagctcatctgctaaaaagtgggcagttttgtagcccaaatgccatgattacct 680
Query: 479 cagc 482
||||
Sbjct: 681 cagc 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space: 412528
Effective search space used: 412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
