BAC Information

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BAC

Clone NameMSMg01-354D21
Chromosome11 (Build37)
Map Location 112,441,792 - 112,578,219
singlet/doubletdoublet
Overlap geneLOC100041610, LOC671963, LOC667047, BC006965
Upstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
Downstream geneSox9, 2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354D21.T7 (MSMg01no354_d21.b1)MSMg01-354D21.TJ (MSMg01no354_d21.g1)
ACCAG464920AG464921
length766774
length of high quality
(start - end)		516 (71 - 586)406 (78 - 483)
definitionCHROMAT_FILE: MSMg01no354_d21.b1 PHD_FILE: MSMg01no354_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:20 2005CHROMAT_FILE: MSMg01no354_d21.g1 PHD_FILE: MSMg01no354_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,577,704 - 112,578,219)(112,441,792 - 112,442,197)
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAACACTATATCTAGGTTATTGCATAAGCTCGGGGAATGTGGC
CCTTTGTCTTTCAGGTGACATTTTACCCTCTGTGCTGCTGAAATAATGGT
CAGTAGAGCCTGAGTTGGAAGACAAAGTGTGTTCCTGTCACCCTGAGGAG
AATGGAAAGTCCCTTACGCAGAGGACAAACACAGAGCTGTGTGTGGCCGG
CACATACACCTTTTCTTCAGTTACACGGCTCCTGACAGATGAGGATGCGA
GGGTCGAGTAATTCCCCATAAACTCTGGGTCCTACGGCAGATTGAAAATG
TAAAGGCTCCGTCTGGAGCTGGCATGTCATGCATGGACTCAGAAGCCCAA
AGAGGCCCGCTGCCTCTGAGAGACTGCTCTCACTTCTGGAAAAAGCTTAG
AAGTGGCTTCTATGTTCTCCACCTAGAAAACCACAGGGCGGGATCCTGCC
TTGACCCTCAGCACCGGTGTATTCAGGTGCCTGCTGGCCATGGAAGGCAA
GACAGAACACCAGACTCCCTTTGTCAGGGCATGTGCATTGTCCCATGTGG
AGGGCAGCAGCCCTTATAGGGAAGGATGGAAAGGGAATGCACGCCTGGTT
GCTGAAGCACAGGGGTCAAGTGGTTGAAAACCTCTTCATGATGGGAAGTG
AATGGGGATNCCAACCACAATTCTGCCTCCCCGGGGTTTTTGCAGCCTAA
ATTCACATAACATTTA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAGGTTGATCAACCACCAA
AGAGAGGGAGGTTTGCTATATGAACCTCCAACACTTTGAATTTTGAATAA
ATTATCTCCCTTGAACTTTTGATCCTTCTGCCTCTGCTTCCTGGACGCTA
GGATTACAGATGTGCATTACAGAGCTCCCTGAATCCTAGGCAAGCTGAGT
TCATATGAAGTAGTTTTGCCCAGCCACATTTTCAATGTCTGGATCTTTGG
AAAGACTCCAAAAAGGAAGCTTCAGCTAGACCCGAGACAACATTAGGACA
CTGTGATCAAATGCTTCCTGCTTATCCTTACTTAGCATTTCTTACTACCT
TGACCAGTGACAGAGATAGCACCTACTTCAAGCTGATGCCCCCATATCAA
ATTGCACAGCTTTCAAAAAAGATTGGGAATCAGATACAGGGAGAGAATGG
AAAATACAAGTCTCCTCTCAGAAGGTAGCTTTAGCCGAGACTGTAATGTT
TGGCAAAATAATCTAAATGAATCAAGTAGGACTGAAAGATTACAGTTGAA
CCCAGAACAGTCGCTCAAGCCCCTATCAGGTATGATCCGACCCCGAGACG
GAGGAAAAGAAGAATGGAGGGAGTTTAAACCAAACCTCCGGGAGGGAAAC
CCCCCCTCCGGGTTCTATCTTTTGGAAAGGGGCGGGCTTTATAAAAATTG
AATTTAAAAATGGGGGGACCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_d21.b1 MSMg01no354_d21.b1 CHROMAT_FILE:
MSMg01no354_d21.b1 PHD_FILE: MSMg01no354_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:20 2005
         (516 letters)



>mm_chr11_112577504_112578419
          Length = 916

 Score =  975 bits (504), Expect = 0.0
 Identities = 513/516 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttattgcataagctcggggaatgtggccctttgtctttcaggtgacattttaccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aggttattgcataagctcggggaatgtggccctttgtctttcaggtgacattttaccctc 657

                                                                       
Query: 61  tgtgctgctgaaataatggtcagtagagcctgagttggaagacaaagtgtgttcctgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tgtgctgctgaaataatggtcagtagagcctgagttggaagacaaagtgtgttcctgtca 597

                                                                       
Query: 121 ccctgaggagaatggaaagtcccttacgcagaggacaaacacagagctgtgtgtggccgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccctgaggagaatggaaagtcccttacgcagaggacaaacacagagctgtgtgtggccgg 537

                                                                       
Query: 181 cacatacaccttttcttcagttacacggctcctgacagatgaggatgcgagggtcgagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cacatacaccttttcttcagttacacggctcctgacagatgaggatgcgagggtcgagta 477

                                                                       
Query: 241 attccccataaactctgggtcctacggcagattgaaaatgtaaaggctccgtctggagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 attccccataaactctgggtcctacggcagattgaaaatgtaaaggctccgtctggagct 417

                                                                       
Query: 301 ggcatgtcatgcatggactcagaagcccaaagaggcccgctgcctctgagagactgctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggcatgtcatgcatggactcagaagcccaaagaggcccgctgcctctgagagactgctct 357

                                                                       
Query: 361 cacttctggaaaaagcttagaagtggcttctatgttctccacctagaaaaccacagggcg 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 356 cacttctggaaaaagcttagaaatggcttctatgttctccacctagaaaaccacagggcg 297

                                                                       
Query: 421 ggatcctgccttgaccctcagcaccggtgtattcaggtgcctgctggccatggaaggcaa 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 296 ggatcctgccttgaccctcagcaccagtgtattcaggtgcctgctggccatggaaggcat 237

                                               
Query: 481 gacagaacaccagactccctttgtcagggcatgtgc 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 gacagaacaccagactccctttgtcagggcatgtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_d21.g1 MSMg01no354_d21.g1 CHROMAT_FILE:
MSMg01no354_d21.g1 PHD_FILE: MSMg01no354_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:20 2005
         (406 letters)



>mm_chr11_112441592_112442397
          Length = 806

 Score =  708 bits (366), Expect = 0.0
 Identities = 396/406 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaggttgatcaaccaccaaagagagggaggtttgctatatgaacctccaacacttt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaggctgatcaaccaccaaagagagggaggtttgctatatgaacctccaacacttt 260

                                                                       
Query: 61  gaattttgaataaattatctcccttgaacttttgatccttctgcctctgcttcctggacg 120
           ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gaattttgaataaataatctcctttgaacttttgatacttctgcctctgcttcctggacg 320

                                                                       
Query: 121 ctaggattacagatgtgcattacagagctccctgaatcctaggcaagctgagttcatatg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataggattacagatgtgcattacagagctccctgaatcctaggcaagctgagttcatatg 380

                                                                       
Query: 181 aagtagttttgcccagccacattttcaatgtctggatctttggaaagactccaaaaagga 240
           ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct: 381 aagtagttttgcccagccacattctcagtgtctggatctttggaaagactccaaaaagca 440

                                                                       
Query: 241 agcttcagctagacccgagacaacattaggacactgtgatcaaatgcttcctgcttatcc 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 agcttcagctagacccgagacaacattagggcactgtgatcaaatgcttcctgcttatcc 500

                                                                       
Query: 301 ttacttagcatttcttactaccttgaccagtgacagagatagcacctacttcaagctgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacttagcatttcttactaccttgaccagtgacagagatagcacctacttcaagctgat 560

                                                         
Query: 361 gcccccatatcaaattgcacagctttcaaaaaagattgggaatcag 406
           |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gcccccatatcaaattgcacggctttcaaaaaagattgggaatcag 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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