BAC Information

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BAC

Clone NameMSMg01-354H22
Chromosome11 (Build37)
Map Location 118,819,908 - 119,001,645
singlet/doubletdoublet
Overlap geneEnpp7, Cbx2, Cbx8, Cbx4
Upstream geneSocs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
Downstream geneTbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354H22.T7 (MSMg01no354_h22.b1)MSMg01-354H22.TJ (MSMg01no354_h22.g1)
ACCAG465109AG465110
length792776
length of high quality
(start - end)		496 (46 - 541)445 (77 - 521)
definitionCHROMAT_FILE: MSMg01no354_h22.b1 PHD_FILE: MSMg01no354_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:39 2005CHROMAT_FILE: MSMg01no354_h22.g1 PHD_FILE: MSMg01no354_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,001,153 - 119,001,645)(118,819,908 - 118,820,352)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGTTTCCATGAGAGGGAATCCCGTCTACTTGAAAAGCTGAACTC
TGCAGGAAGTCCACTAGTAACATATCTCAAGGAGGTCGCAGAAGGAAGGA
GCAACCTTCATGACGGCCGCAGACTGAGTCCCTCTCTTCTGCCCACCCCT
TGCCACCATTGTAGGCTGTAGCAAAAAGCCTCCAAATCCACAGGCCACCT
GGGTGTTTCTCAAAAGCAGGCTCGGGTCTCTTCCATAAAAAGCTTGGGCT
TTCAGTCTCCCAAATTTTCCTTCTGGGTTCTTGGGAAGTGTCCAGTTGTG
CCAAATGCACCACTTGGATGGTGTGTTCCCTCAGTTATTGGGTTTTTCTG
TTTGACTGACTTTGGGACCGCCTGCCTCAGGCAAGCAGCATAAATGGAGT
CTCGGCTGTGATCGGCATCCCTGAAATGGAGAACTCCTGGCACAAGTATC
TATGGAGCCTTTATGCTTACGTGAGATCTGCCAGTTTTACCAGGACAGGG
CCCAGGTAGGTGGCTGGGACAAGCGTGTCTGCATGTGCGCCTAGGAAGGT
TGGAAACTAAAGGCCTGCTTTTTGTCGGGGGGTCCCTTTATCCCCCCTTC
AAGTGGGCCAGGTGGTCCCCCCCCCCCGGTAGTCGGCCAATATTCCCGCT
CTTTTTAAAAAATACCTCCCCTCCCCCTATTTTTCCGGCTTAACAACATT
TTTTGGCTCCTTCTCTTTTTTGACGCAGTATTTTTTCTGCTC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCCCACATCCCGGATGGTGGAA
GGAGAGAACTGACTCCCACAGTTGTTCTCTGACATACTTCACATGCATGA
CATAACACACACACACACTAGAATACTTAAATAAAACATAGACTTGTCAG
CCCCATAGACCATACCCCTCTTTCTTCTGGTGTCCAGAGCTCTCCCCTGG
GCCAGAGGCCACATACTCCTGGTTTTTATCTCACCAAGGTCACAAGTCAA
CAGCCAAGCTGTAGACCCAGTTACTCCTCCTCTGAGGGTCCCTCCTTTGC
TTTCCCCTGGCCCTTCCTGGGCCCCCTTACTGCTGACCTCTAACATCAGG
TAGCCCAAGCTTCCAGGGAACTTGCAAAGCTGCCCTCTGCTCCAAGCCTG
GAGGGTAAGCAGAGTCTCCAGGAAGGAGCTGCCTTTGAACTCTCACTGAT
CCTAGGAAGTTTCTCCCACCAGATCCTGGGTGAGACATTGCAAAGAGTCC
CAAGGGGAGACAGGTAGAAGGAGCTGAAACTGTGCCAAGGAACCTTCTAT
GTAGTGGGGAAAGGGGGGCTGCCCATAAATGACTTGGGGGTTGGGAAGAA
ACCACCGCTTTGGAAAAATCCCCATTTTTTTTTTGGGCCCAGTTTGTTAT
TATCTACCCCACCTCCGGGCTCCCTTTTTAATATAATAAATTCTCTTTCC
CTCGTTCTTTTTTTTCCCACAAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_h22.b1 MSMg01no354_h22.b1 CHROMAT_FILE:
MSMg01no354_h22.b1 PHD_FILE: MSMg01no354_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:39 2005
         (496 letters)



>mm_chr11_119000950_119001845
          Length = 896

 Score =  899 bits (465), Expect = 0.0
 Identities = 486/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggtttccatgagagggaatcccgtctacttgaaaagctgaactctgcaggaa 63
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 696 ggaattctggtttccatgagagggaatcctgtctacttgaaaagctgaactctgcaggaa 637

                                                                       
Query: 64  gtccactagtaacatatctcaaggaggtcgcagaaggaaggagcaaccttcatgacggcc 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtccactagtaacacatctcaaggaggtcgcagaaggaaggagcaaccttcatgacggcc 577

                                                                       
Query: 124 gcagactgagtccctctcttctgcccaccccttgccaccattgtaggctgtagcaaaaag 183
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 576 gcaggctgagtccctctcttctgcccaccccttgccaccattgtagactgtagcaaaaag 517

                                                                       
Query: 184 cctccaaatccacaggccacctgggtgtttctcaaaagcaggctcgggtctcttccataa 243
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 516 cctccaaatccacgggccacctgggtgtttctcaaaagcaggctcgggtctcttccatta 457

                                                                       
Query: 244 aaagcttgggctttcagtctcccaaattttccttctgggttcttgggaagtgtccagttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaagcttgggctttcagtctcccaaattttccttctgggttcttgggaagtgtccagttg 397

                                                                       
Query: 304 tgccaaatgcaccacttggatggtgtgttccctcagttattgggtttttctgtttgactg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgccaaatgcaccacttggatggtgtgttccctcagttattgggtttttctgtttgactg 337

                                                                       
Query: 364 actttgggaccgcctgcctcaggcaagcagcataaatggagtctcggctgtgatcggcat 423
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 actatgggaccgcctgcctcaggcaagcagcataaatggagtctcggctgtgatcggcat 277

                                                                       
Query: 424 ccctgaaatggagaactcctggcacaagtatctatggagcctttatgcttacgtgagatc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccctgaaatggagaactcctggcacaagtatctatggagcctttatgcttacgtgagatc 217

                        
Query: 484 tgccagttttacc 496
           |||||||||||||
Sbjct: 216 tgccagttttacc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_h22.g1 MSMg01no354_h22.g1 CHROMAT_FILE:
MSMg01no354_h22.g1 PHD_FILE: MSMg01no354_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:39 2005
         (445 letters)



>mm_chr11_118819708_118820552
          Length = 845

 Score =  845 bits (437), Expect = 0.0
 Identities = 443/445 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcccacatcccggatggtggaaggagagaactgactcccacagttgttctctgacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcccacatcccggatggtggaaggagagaactgactcccacagttgttctctgacata 260

                                                                       
Query: 61  cttcacatgcatgacataacacacacacacactagaatacttaaataaaacatagacttg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 cttcacatgcatgacataacacacacacacactagcatacttaaataaaacatagacttg 320

                                                                       
Query: 121 tcagccccatagaccatacccctctttcttctggtgtccagagctctcccctgggccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagccccatagaccatacccctctttcttctggtgtccagagctctcccctgggccaga 380

                                                                       
Query: 181 ggccacatactcctggtttttatctcaccaaggtcacaagtcaacagccaagctgtagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccacatactcctggtttttatctcaccaaggtcacaagtcaacagccaagctgtagac 440

                                                                       
Query: 241 ccagttactcctcctctgagggtccctcctttgctttcccctggcccttcctgggccccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagttactcctcctctgagggtccctcctttgctttcccctggcccttcctgggccccc 500

                                                                       
Query: 301 ttactgctgacctctaacatcaggtagcccaagcttccagggaacttgcaaagctgccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttactgctgacctctaacatcaggtagcccaagcttccagggaacttgcaaagctgccct 560

                                                                       
Query: 361 ctgctccaagcctggagggtaagcagagtctccaggaaggagctgcctttgaactctcac 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ctgctccaagcctggagggtaagcagagtctccaggaaggagctgcctttgaactcacac 620

                                    
Query: 421 tgatcctaggaagtttctcccacca 445
           |||||||||||||||||||||||||
Sbjct: 621 tgatcctaggaagtttctcccacca 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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