Query= MSMg01no354_j12.b1 MSMg01no354_j12.b1 CHROMAT_FILE:
MSMg01no354_j12.b1 PHD_FILE: MSMg01no354_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:47 2005
(374 letters)
>mm_chr11_104868260_104869033
Length = 774
Score = 514 bits (266), Expect = e-150
Identities = 338/366 (92%), Gaps = 7/366 (1%)
Strand = Plus / Plus
Query: 5 gaattcctacatgcctgtaacttaagcaattggcagaaggattactaaaagtccatccaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcctacatgcctgtaacttaagcaattggcagaaggattactaaaagtccatccaa 271
Query: 65 ggccatcctgtgctacctagtaagttccaagccagccagacaacacacacacacacacac 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggccatcttgtgctacctagtaagttccaagccagccagacaacacacacacacacg--- 328
Query: 125 acacacacacacacacacacacacacacacacacacacacagagagagagagagagagag 184
| | | | | | | | | | | | | | | | | | ||||||||||||||||||||
Sbjct: 329 ----agagagagagagagagagagagagagagagagagagagagagagagagagagagag 384
Query: 185 agagagagagagaatctacaattagattaatctgagaatttaaggtatttcttatggaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagagagagagaatctacaattagattaatctgagaatttaaggtatttcttatggaga 444
Query: 245 agaatttggcctgaaagcaagaaggaatgctgtcttttgtctttttggaatctgaagtca 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 agaatttggcctgaaagcaagaaggaaagctgtcttttgtctttttggaatctgaagtca 504
Query: 305 ccatggtgttccagtgagtgctgagagcacactgacaggccagggacttctaggaaaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccatggtgttccagtgagtgctgagagcacactgacaggccagggacttctaggaaaaaa 564
Query: 365 agaaaa 370
||||||
Sbjct: 565 agaaaa 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_j12.g1 MSMg01no354_j12.g1 CHROMAT_FILE:
MSMg01no354_j12.g1 PHD_FILE: MSMg01no354_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:47 2005
(510 letters)
>mm_chr11_105007406_105008313
Length = 908
Score = 959 bits (496), Expect = 0.0
Identities = 506/510 (99%), Gaps = 2/510 (0%)
Strand = Plus / Minus
Query: 1 aatgaagtttctgctcttttgagtttttagacagaatttgaggttctagaaggccttggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aatgaagtttctgctcttttgagtttttagacagaatttgaggttctagaaggccttggg 539
Query: 61 agtgcagggagatgttcaggagctatttagataaactaaaggctcaagacaagggattga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agtgcagggagatgttcaggagctatttagataaactaaaggctcaagacaagggattga 479
Query: 121 ttcccatctgggaatcacacgcttcctggtgacactgccatctctaaagtgtcttgttct 180
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 478 ttctcatctgggaatcacacgcttcctggtgacactgccatctct--agtgtcttgttct 421
Query: 181 ttgctcttgctgtcacctgggactgtgcactgtaccttgaacccatatgacctgttccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttgctcttgctgtcacctgggactgtgcactgtaccttgaacccatatgacctgttccct 361
Query: 241 ttggtagctgatggcctccatcccttgcccaggtgtgcctggcttctgggacattctggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttggtagctgatggcctccatcccttgcccaggtgtgcctggcttctgggacattctggg 301
Query: 301 agccgctcttctcactgggttgtttcagaggatgtcacttcctggttttctctagggatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agccgctcttctcactgggttgtttcagaggatgtcacttcctggttttctctagggatc 241
Query: 361 cagctcctaggtgacattctacgcactcacctggggaattataaatatttaccgagtcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 240 cagctcctaggtgacattctacgcactcacctggggaattataaatatttaccgaatcct 181
Query: 421 ctctttggggcagatgctactctaggcattgagattccgctgtgagtctagagaggaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctctttggggcagatgctactctaggcattgagattccgctgtgagtctagagaggaaca 121
Query: 481 tccatgaactctggcaaaggtcagagtgca 510
||||||||||||||||||||||||||||||
Sbjct: 120 tccatgaactctggcaaaggtcagagtgca 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 908
Length adjustment: 10
Effective length of query: 500
Effective length of database: 898
Effective search space: 449000
Effective search space used: 449000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
