Query= MSMg01no355_c22.b1 MSMg01no355_c22.b1 CHROMAT_FILE:
MSMg01no355_c22.b1 PHD_FILE: MSMg01no355_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:34 2005
(487 letters)
>mm_chr11_57313789_57314676
Length = 888
Score = 569 bits (294), Expect = e-166
Identities = 338/358 (94%), Gaps = 11/358 (3%)
Strand = Plus / Minus
Query: 133 aagact--tcttctgtaccactcagctggggccagtgggcaggatgtagatgagaaagag 190
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagacttatcttctgtaccactcagctggggccagtgggcaggatgtagatgagaaagag 410
Query: 191 agaaggcattgctcatttagatgtctagtttgctgtggtcatggtcctcacttgcttgc- 249
||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 409 agaaggcattgttcatttagatgcctagtttgctgtggtcatggtccccatttgcttgca 350
Query: 250 tgctttgtgtctccttgtcctactgagtggttgctgtaataaacaccaggaccggaagta 309
||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 349 tgctttg--------tgtcctactgagtggttgctgtaataaacaccaggactggaagta 298
Query: 310 actaagggaggaaagggtttattttgcttacattgtcagctaacagctcagtgctgaggg 369
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 297 actaagggaggaaagggtttattttgcttacattgtcaggtaacagctcagtgctgaggg 238
Query: 370 aactggggtgagaactcaaacggggaagaaacgtagaggtagcagctgatgcagaggcca 429
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 237 aactggggtgagaactcaaacggggaagaatcgtagaggtagcagctgatgcagaggctg 178
Query: 430 tggaggagtgctacttactggcttgttcctcatggcttgctcggcctgatttcttaaa 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tggaggagtgctacttactggcttgttcctcatggcttgctcggcctgatttcttaaa 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 888
Length adjustment: 10
Effective length of query: 477
Effective length of database: 878
Effective search space: 418806
Effective search space used: 418806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_c22.g1 MSMg01no355_c22.g1 CHROMAT_FILE:
MSMg01no355_c22.g1 PHD_FILE: MSMg01no355_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:34 2005
(385 letters)
>mm_chr11_57113192_57113977
Length = 786
Score = 708 bits (366), Expect = 0.0
Identities = 381/386 (98%), Gaps = 1/386 (0%)
Strand = Plus / Plus
Query: 1 catacaaaacactcttgtctccatcctacactgttcatctgtggagcacatgtggcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaaaacactcttgtctccatcctacactgttcatctgtggagcacatgtggcctcc 260
Query: 61 ctgagaaggggtcatcctctaggttaatgtcttgccatatacttaaatccaaatggcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagaaggggtcatcctctaggttaatgtcttgccatatacttaaatccaaatggcaaa 320
Query: 121 agtatgtctaacacataatgaggtctccttgcttgcctgtgatggcttaaactgagcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatgtctaacacataatgaggtctccttgcttgcctgtgatggcttaaactgagcccc 380
Query: 181 tctccccaataaggcatgcctcccaaaattccatgttttggggggggggg-tttccactc 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tctccccaataaggcatgcctcccaaaattccatgttttggggggggggggtttccactc 440
Query: 240 catggattatatcactttagactgatggtaccacaaggtcttcaccgcccctgtgtatgc 299
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggagcagatcactttagactgatggtaccacaaggtcttcaccgcccctgtgtatgc 500
Query: 300 agtgccctatgtgcattcttcccctgtgtcctatcttcccctagccttgtgattcagcta 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 agtgccctatgtgcattcttcccctgtgtcctatcttctcctagccttgtgattcagcta 560
Query: 360 tccccatttcccagtctctgcctaag 385
||||||||||||||||||||||||||
Sbjct: 561 tccccatttcccagtctctgcctaag 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 786
Length adjustment: 9
Effective length of query: 376
Effective length of database: 777
Effective search space: 292152
Effective search space used: 292152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
