BAC Information

Click to search

BAC

Clone NameMSMg01-355H22
Chromosome11 (Build37)
Map Location 59,102,546 - 59,276,300
singlet/doubletdoublet
Overlap geneWnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078
Upstream gene4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1
Downstream geneLOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355H22.T7 (MSMg01no355_h22.b1)MSMg01-355H22.TJ (MSMg01no355_h22.g1)
ACCAG465870AG465871
length767765
length of high quality
(start - end)		464 (49 - 512)384 (81 - 464)
definitionCHROMAT_FILE: MSMg01no355_h22.b1 PHD_FILE: MSMg01no355_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:57 2005CHROMAT_FILE: MSMg01no355_h22.g1 PHD_FILE: MSMg01no355_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,102,546 - 59,103,006)(59,275,917 - 59,276,300)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCGCGGTGGCGGGTTCTAATTAGAAGCCTGGCGCAGCAGCGGG
CAGCCCGCGGGGCTCCCTCGGACGCGCTGCCCCTGGCTCCCCGCGGACGC
CGGGACGCGCCTCAGTGCGTCCGCGCTCCTAGACGCGCCCGACGCAATCC
TCACTCCCGGAGGCCACAGGGCTCCACAGGTGCCCCTTCGGGTCTTAAAA
ATCTCAAGGGAGCGGAGGCTCAGCTAGATCTCTGTGGAGCGCAGCCGCTG
CCCAGCAGCCTTTCCAGCCCCTAGCGACTCCCAGTAGCCCACCCTCCATC
CCTGCAGCGGAGCGGGCCCTGCATCCCCACCCCAGGCTTCTCAGCTCTTC
TCCTAAAGCATCTCGAAGAGAAAAATGATTATCGGATTAGATGTACTTCG
GCTCGCTGGGTCCCCCCTTCCCCTCGGCATAATTATTATAATTCCAGGCA
AGCTGTCGGAGTGTTCCTGGGCGGNGGGGGGGGTTGCNCATGTCTGTGGG
AGGCTTCTGTCCCTTTGATTTTCTTCACCGTGGTGTGTCTGTCCCCTTTC
TGTCCCATTCCCTCCCTTTTGTGTCCTTCATACACTTTCCCCCTTATTTT
TGACTTCAATATTTCGCCCCTCTCAGCCGTTTGCTGTCCTCCCCCTCCCC
GCACGTATGGTCCGTTTTATGCTCTCTTTCCCTGCTGCCCCTTTCCTTCC
GCTTGCCCTTCCCCCCN

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTTGGAGAGTATCCCTAT
TAATGCAAGCACTGGAGAGCCACTGACTACAGTTGCCTTGAAAACATGAG
TAAACTTGTACGGGAGACATGTCCTTTGAGTACAAATAAATATGGTAAAT
GTCACCATTTCCATTTGCCCTCAAAGAAACTACTCCTTGGACAGCATATC
ATCAGAGTGACTGTAAAGACTATGAAAAACCAGTGCTTTCCTAATCTCCA
TAAAGGACACAAAAAAGGTTCACACTGAACAGTAGGAAACCCACGTTTGT
GAGAAAAGAGGTAAGGCTTCAGATGCCACAGCTGTCTCAGGCTGTGTGAA
AGAACACATACTTAGCTAAAACACTAGGACTAGGAACATGGGGGAAGCAC
TCAGATTCTCAGTGTTCCTCAAAGGCATAAAAAGGACCAGAGGGGAAAAC
ACCTGTAGGCCTAAGTAATGTGGGTAGGCTTCAATTTTACACTTTCTTCT
GAGAAGCANGGAAACACTCTGCAGAAAATCTGAGCTTAAAAACTGTGCCC
AGAACCTTCCGTTTCCCTCCTTCTTCCAAGGGAAGCTAGAAACCCTCCTA
AAAAAACAATTGGTTAAAGGAAAAACTGAGCTCTTGTTTCTTTAAAAGAA
ATTGGACACCGGAAAAGGTTGGTAAGGACTTACTTTTAAATGTGAAAATA
ATTCTCCCGCCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_h22.b1 MSMg01no355_h22.b1 CHROMAT_FILE:
MSMg01no355_h22.b1 PHD_FILE: MSMg01no355_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:57 2005
         (464 letters)



>mm_chr11_59102343_59103206
          Length = 864

 Score =  876 bits (453), Expect = 0.0
 Identities = 459/461 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccgcggtggcgggttctaattagaagcctggcgcagcagcgggcagcccgcggg 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccgcggcggcgggttctaattagaagcctggcgcagcagcgggcagcccgcggg 263

                                                                       
Query: 64  gctccctcggacgcgctgcccctggctccccgcggacgccgggacgcgcctcagtgcgtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctccctcggacgcgctgcccctggctccccgcggacgccgggacgcgcctcagtgcgtc 323

                                                                       
Query: 124 cgcgctcctagacgcgcccgacgcaatcctcactcccggaggccacagggctccacaggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgcgctcctagacgcgcccgacgcaatcctcactcccggaggccacagggctccacaggt 383

                                                                       
Query: 184 gccccttcgggtcttaaaaatctcaagggagcggaggctcagctagatctctgtggagcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccccttcgggtcttaaaaatctcaagggagcggaggctcagctagatctctgtggagcg 443

                                                                       
Query: 244 cagccgctgcccagcagcctttccagcccctagcgactcccagtagcccaccctccatcc 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagccgctgcccagcagcctctccagcccctagcgactcccagtagcccaccctccatcc 503

                                                                       
Query: 304 ctgcagcggagcgggccctgcatccccaccccaggcttctcagctcttctcctaaagcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgcagcggagcgggccctgcatccccaccccaggcttctcagctcttctcctaaagcat 563

                                                                       
Query: 364 ctcgaagagaaaaatgattatcggattagatgtacttcggctcgctgggtccccccttcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcgaagagaaaaatgattatcggattagatgtacttcggctcgctgggtccccccttcc 623

                                                    
Query: 424 cctcggcataattattataattccaggcaagctgtcggagt 464
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctcggcataattattataattccaggcaagctgtcggagt 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_h22.g1 MSMg01no355_h22.g1 CHROMAT_FILE:
MSMg01no355_h22.g1 PHD_FILE: MSMg01no355_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:58 2005
         (384 letters)



>mm_chr11_59275717_59276500
          Length = 784

 Score =  727 bits (376), Expect = 0.0
 Identities = 382/384 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttggagagtatccctattaatgcaagcactggagagccactgactacagttgccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atgttggagagtatccctattaatgcaagcactggagagccactgactacagttgccttg 525

                                                                       
Query: 61  aaaacatgagtaaacttgtacgggagacatgtcctttgagtacaaataaatatggtaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaaacatgagtaaacttgtacgggagacatgtcctttgagtacaaataaatatggtaaat 465

                                                                       
Query: 121 gtcaccatttccatttgccctcaaagaaactactccttggacagcatatcatcagagtga 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtcaccgtttccatttgccctcaaagaaactactccttggacagcatatcatcagagtga 405

                                                                       
Query: 181 ctgtaaagactatgaaaaaccagtgctttcctaatctccataaaggacacaaaaaaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctgtaaagactatgaaaaaccagtgctttcctaatctccataaaggacacaaaaaaggtt 345

                                                                       
Query: 241 cacactgaacagtaggaaacccacgtttgtgagaaaagaggtaaggcttcagatgccaca 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cacactgaacagtaggaagcccacgtttgtgagaaaagaggtaaggcttcagatgccaca 285

                                                                       
Query: 301 gctgtctcaggctgtgtgaaagaacacatacttagctaaaacactaggactaggaacatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gctgtctcaggctgtgtgaaagaacacatacttagctaaaacactaggactaggaacatg 225

                                   
Query: 361 ggggaagcactcagattctcagtg 384
           ||||||||||||||||||||||||
Sbjct: 224 ggggaagcactcagattctcagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |