Query= MSMg01no355_j06.b1 MSMg01no355_j06.b1 CHROMAT_FILE:
MSMg01no355_j06.b1 PHD_FILE: MSMg01no355_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:04 2005
(531 letters)
>mm_chr11_78425111_78426042
Length = 932
Score = 961 bits (497), Expect = 0.0
Identities = 521/529 (98%), Gaps = 3/529 (0%)
Strand = Plus / Plus
Query: 5 gaattcacctgcatgtggcc-gctgtccatcttaacagtgtatccctttctaatatgtac 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctgcatgtggccagctgtccatcttaacagtgtatccctttctaatatgtac 264
Query: 64 tatctctgtgctccaagcaaagttatcttgccctgtttgcacatctgtgtgaacccttac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatctctgtgctccaagcaaagttatcttgccctgtttgcacatctgtgtgaacccttac 324
Query: 124 tacctgtgatttagaaggaggctaataacctggaaacattcaacctaggcccagctcgga 183
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatctgtgatttagaaggaggctaataacctggaaacattcaacctaggcccagctcgga 384
Query: 184 acagctaacaagtggcga-gctaatctctagccaaacaaagactacagtttgttctgctg 242
||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagctaacaagtagc-atgctaatctctagccaaacaaagactacagtttgttctgctg 443
Query: 243 ctccactggaatatccaccctcttcaatgccacttgtctaaattcttcctatcctttgat 302
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcccctggaatatccaccctcttcaatgccacttgtctaaattcttcctatcctttgat 503
Query: 303 gaagatctgaaacgtttgtttttcctgtgtgaagccatgccaactcccctccctgccttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaagatctgaaacgtttgtttttcctgtgtgaagccatgccaactcccctccctgccttt 563
Query: 363 taaactctaacatcacttgtctatattctcctggcacattctaccatatccattagctat 422
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 564 taaactgtaacatcacttgtctatattctcctggcacatcctaccatatccattagctat 623
Query: 423 tttatttcttcctttttaattttaaaatttatgcatatgaatgttttgcctgcataccac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttatttcttcctttttaattttaaaatttatgcatatgaatgttttgcctgcataccac 683
Query: 483 atgtgtgcctggtgcctggaaaggccagaagaggacactggagcggatg 531
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgtgtgcctggtgcctggaaaggccagaagaggacactggagcggatg 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_j06.g1 MSMg01no355_j06.g1 CHROMAT_FILE:
MSMg01no355_j06.g1 PHD_FILE: MSMg01no355_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:04 2005
(453 letters)
>mm_chr11_78587479_78588331
Length = 853
Score = 810 bits (419), Expect = 0.0
Identities = 443/453 (97%), Gaps = 4/453 (0%)
Strand = Plus / Minus
Query: 1 ctagatgttcatgggccagctagcccagcatatacagtgtctaacaagagaccctgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ctagatgttcatgggccagctagcccagcatatacagtgtctaacaagagaccctgtcaa 715
Query: 61 acaaagtgggaagtgaggactaacaaccaacacgcatgcacacatacacacacacacaca 120
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 714 acgaagtgggaagtgaggactaacaaccaacacgcatgcac----acacacacacacaca 659
Query: 121 cacaccccagcacacccctcacaattaaaaacacaaaacaacaaagaccacaatatgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cacaccccagcacacccctcacaattaaaaacacaaaacaacaaagaccacaatatgtga 599
Query: 181 gccattcagttcaagtgagtgcaaccctctcagcatgctaggcagggaagggtcacatcc 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 598 gccattcagttcaagtgagtgcaaccctctccgcatgctaggcagggaagggtcacatcc 539
Query: 241 ttcccccaccagccttttacaggaacctgaacttgacagtacagtcttgtctatcctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttcccccaccagccttttacaggaacctgaacttgacagtacagtcttgtctatcctgaa 479
Query: 301 gtcacaccagatcacgcactgtttgtgtattcctctgttagagcgcgtggagcaccgcct 360
||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||
Sbjct: 478 gtcacaccagatcacgcactgtttgtggattcctctgttagagtgtgtggagcaccgtct 419
Query: 361 atgagccaggctctgggaaatgcctggaggaccaaggcctctgacctaggagctacctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atgagccaggctctgggaaatgcctggaggaccaaggcctctgacctaggagctacctga 359
Query: 421 gtcatccttctctccctggcccattttgcatcc 453
|||||||||||||||||||||||||||||||||
Sbjct: 358 gtcatccttctctccctggcccattttgcatcc 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
