BAC Information

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BAC

Clone NameMSMg01-355N20
Chromosome11 (Build37)
Map Location 100,037,060 - 100,220,494
singlet/doubletdoublet
Overlap geneKrt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1
Upstream geneSmarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19
Downstream geneLOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355N20.T7 (MSMg01no355_n20.b1)MSMg01-355N20.TJ (MSMg01no355_n20.g1)
ACCAG466150AG466151
length754761
length of high quality
(start - end)		453 (52 - 504)469 (82 - 550)
definitionCHROMAT_FILE: MSMg01no355_n20.b1 PHD_FILE: MSMg01no355_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:25 2005CHROMAT_FILE: MSMg01no355_n20.g1 PHD_FILE: MSMg01no355_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,037,060 - 100,037,509)(100,220,026 - 100,220,494)
sequence
NNNAAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCGGTATTCTCTAAATGGTTCTGTTATCATTAGTGTTGGTG
TTCTTTAGGTCCTAAAGTTTAGATCTCTATGGGGACAGAACCTCTGTCGT
CTACCACAGGCATTGTAAGTACCAGCAACTGGCCCCGGCATGGCATAGAG
CAGATCTGAAACACGTGCATGCTCAGTGTAGGGATCAATGACTTCATCAA
GGTGGCCAGGGTCTGGACCACAGCTTCCAACCAGCCGCCAACTGCCTCCC
ACCTCACCTTCAACCTCAGACTGGACTTTTGGGGATTGGTAAGTTCTGTT
TCATTTCTCTGGGTCTCCTCTGACTTGACAAAAGTTCTTTGCACACCCCA
ATATTTCCCAATCATGCTGAGAACCAATGGAGGGTTCATAGTTGACCAAG
TTTAGCCTAAGTCAAGATGAGGATGGAATATGGCTAAGGCTGAAGTGCTG
GTGGCAGAGATTCCAGAAGATAGAAACCATCTTGGAATGGATGGATGAAT
GTATGGATGTACGCCCTTTCTTTTCTTCCCCCTTTTTTTCCCTTCATTTC
CTTTTTATTCCCCTCTACTTTCTCCCCAATTTTTTTTTCTTCATCTTTCC
CTCCCCTCCTCTCTTTTTTTTTTTTTCCCCCACTCCTCCCTTCTTCTCTT
TCATATTCTTAATTCCCCCCCCATCTCTCTTTTTTTCTCTTATCCTTTTT
CTCC

NNCCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGGGGCTTGCTGGCCA
GCCAGCCAAGCTGAAACATTCTAAGTTCCGGGTTCATTGAGACATCTGTG
TCAAAGGAGTAAGGTGAAAAGCACGAGAGTTTTCCTCCAGCTTCTGGCCA
GAGATGTGTTGCACACATACATTGCTGTTCATGTACAAACATGCACACAC
ACAAATGCACAAGCACACACATTAGAATAGGTACTCGATGTGTTTGTTGA
ATGAATGAATAAATGAACAGAAATAAAGGGAAATGTTTTCAGGGGAAGGG
CTTTAAGGCACCTTCTCATGTAGCCCGAGCTGGCCTCAAATGTTCTACAT
AATCCAGGTTGGCTTCAAATCTGCCACGGAGCCCAGGCTGGCCTTGAACT
CATGATCCTTCCACCTCACTCCCAGGGGCTGGGATTGCAGACGTACATTA
CCACCTGTGGCAGAAAGTCATAGTGGAATGGCAGTGCCTCTTGACAGGGT
GGGTACTGATGGAAGGCCACATTGATTCTTTCTGGTTTGTCTTTATTGGG
CTGGACTGGGTGGAAACCTGAATTTGTTAGCGTATTAGACATTTTTTTCT
TCGCCTTTTACCTTCGCTAAACTTCTCCTGGTTCTTATTTCCAAACACGT
CTGCTGTGATATATATTCGTCCCTTTACTCTTTTTATCCTTTCCCCCTTC
TCGTGCAGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_n20.b1 MSMg01no355_n20.b1 CHROMAT_FILE:
MSMg01no355_n20.b1 PHD_FILE: MSMg01no355_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:25 2005
         (453 letters)



>mm_chr11_100036857_100037709
          Length = 853

 Score =  855 bits (442), Expect = 0.0
 Identities = 448/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcggtattctctaaatggttctgttatcattagtgttggtgttctttaggtccta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcggtattctctaaatggttctgttatcattagtgttggtgttctttaggtccta 263

                                                                       
Query: 64  aagtttagatctctatggggacagaacctctgtcgtctaccacaggcattgtaagtacca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagtttagatctctatggggacagaacctctgtcgtctaccacaggcattgtaagtacca 323

                                                                       
Query: 124 gcaactggccccggcatggcatagagcagatctgaaacacgtgcatgctcagtgtaggga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcaactggccccggcatggcatagagcagatctgaaacacgtgcatgctcagtgtaggga 383

                                                                       
Query: 184 tcaatgacttcatcaaggtggccagggtctggaccacagcttccaaccagccgccaactg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 tcaatgacttcatcaaggtggccagggtctggaccacagcttccaaccagctgccaactg 443

                                                                       
Query: 244 cctcccacctcaccttcaacctcagactggacttttggggattggtaagttctgtttcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctcccacctcaccttcaacctcagactggacttttggggattggtaagttctgtttcat 503

                                                                       
Query: 304 ttctctgggtctcctctgacttgacaaaagttctttgcacaccccaatatttcccaatca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttctctgggtctcctctgacttgacaaaagttctttgcacaccccaatatttcccaatca 563

                                                                       
Query: 364 tgctgagaaccaatggagggttcatagttgaccaagtttagcctaagtcaagatgaggat 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 tgctgagaaccaatggagggttcatagttgaccaagtttagcctaagccaagatgaggat 623

                                         
Query: 424 ggaatatggctaaggctgaagtgctggtgg 453
           ||||||||||||||||||||||||||||||
Sbjct: 624 ggaatatggctaaggctgaagtgctggtgg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_n20.g1 MSMg01no355_n20.g1 CHROMAT_FILE:
MSMg01no355_n20.g1 PHD_FILE: MSMg01no355_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:25 2005
         (469 letters)



>mm_chr11_100219886_100220754
          Length = 869

 Score =  899 bits (465), Expect = 0.0
 Identities = 468/469 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgggggcttgctggccagccagccaagctgaaacattctaagttccgggttcattgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cctgggggcttgctggccagccagccaagctgaaacattctaagttccgggttcattgag 550

                                                                       
Query: 61  acatctgtgtcaaaggagtaaggtgaaaagcacgagagttttcctccagcttctggccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acatctgtgtcaaaggagtaaggtgaaaagcacgagagttttcctccagcttctggccag 490

                                                                       
Query: 121 agatgtgttgcacacatacattgctgttcatgtacaaacatgcacacacacaaatgcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agatgtgttgcacacatacattgctgttcatgtacaaacatgcacacacacaaatgcaca 430

                                                                       
Query: 181 agcacacacattagaataggtactcgatgtgtttgttgaatgaatgaataaatgaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agcacacacattagaataggtactcgatgtgtttgttgaatgaatgaataaatgaacaga 370

                                                                       
Query: 241 aataaagggaaatgttttcaggggaagggctttaaggcaccttctcatgtagcccgagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aataaagggaaatgttttcaggggaagggctttaaggcaccttctcatgtagcccgagct 310

                                                                       
Query: 301 ggcctcaaatgttctacataatccaggttggcttcaaatctgccacggagcccaggctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggcctcaaatgttctacataatccaggttggcttcaaatctgccacggagcccaggctgg 250

                                                                       
Query: 361 ccttgaactcatgatccttccacctcactcccaggggctgggattgcagacgtacattac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ccttgaactcatgatccttccacctcactcccaggggctgggattgcagacgtacattac 190

                                                            
Query: 421 cacctgtggcagaaagtcatagtggaatggcagtgcctcttgacagggt 469
           ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cacctgtggtagaaagtcatagtggaatggcagtgcctcttgacagggt 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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