Query= MSMg01no356_a09.b1 MSMg01no356_a09.b1 CHROMAT_FILE:
MSMg01no356_a09.b1 PHD_FILE: MSMg01no356_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:38 2005
(575 letters)
>mm_chr11_105852671_105853645
Length = 975
Score = 955 bits (494), Expect = 0.0
Identities = 558/584 (95%), Gaps = 13/584 (2%)
Strand = Plus / Plus
Query: 4 ggaattccaggtgtgtac-gaccacacctggccacctgacagcgcacattcttcatggct 62
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggtgtg-agagaccacacctggccacctgacagcgcacattcttcatggct 262
Query: 63 agtccatgggttttatttggttttaaattgcatttgattattgggggtggctcaccacag 122
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 263 agtccacgagttttatttggttttaaattgcatttgattactgggggtggctcaccacag 322
Query: 123 tacacatggaagaggtctgaggacaacgtctttcctcagtgccatctgctctgatcactg 182
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cacacatgggagaggtctgaggacaacgtctttcctcagtgccatctgctctgatcactg 382
Query: 183 tctctgtcaccgggcaccggctctggaaccagagcatttggttcagtccagcttccgtta 242
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 383 tctctgtcaccgggcaccggctcttgaaccagagcatttggttcagtccagcttccgtta 442
Query: 243 ttttccctgtgtctataagcaagcccctctgcttatctccatctgaagctggatagtgat 302
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 443 ttttccctgtgtctataagcaagcccctctgcttgtctccatctgaagctggatggtgat 502
Query: 303 ggtgcacgcctttaatcccagcacttttgggaggcagaggcagatgtagtcagtgagagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggtgcacgcctttaatcccagcacttttgggaggcagaggcagatgtagtcagtgagagg 562
Query: 363 cagaggcaggtggatttttgagttcgaggccagcctggtcttcaaattgagttccaggac 422
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 563 cagaggcaggtggatttttgagttcgaggccagcctggtcttcgaattgagttccaggac 622
Query: 423 agccagggctacacagagaaaccctgtctcgaaaaaaaac-----caacaaaacaaaaca 477
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 623 agccagggctacacagagaaaccctgtctcgaaaaaaaaaaaaaacaacaaaacaaaaca 682
Query: 478 aaa-caaaac-a----tgaaagtccccttaaaggcagagcctgggacatcctctgtgggg 531
||| |||||| | ||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 683 aaaacaaaactaaacgtgaaagtccccttaaaggcagagcctgggacgtcctctgcgggg 742
Query: 532 gcaggttactgtagccacacctggctttagatttccttctactt 575
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gcaggttactgtagccacacctggctttagatttccttctactt 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_a09.g1 MSMg01no356_a09.g1 CHROMAT_FILE:
MSMg01no356_a09.g1 PHD_FILE: MSMg01no356_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:38 2005
(489 letters)
>mm_chr11_106061701_106062589
Length = 889
Score = 803 bits (415), Expect = 0.0
Identities = 436/443 (98%), Gaps = 2/443 (0%)
Strand = Plus / Minus
Query: 48 gcactgccactctcaaaaaaaaaggattttgagtaataatagggtgagtggaggtgcccg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gcactgccactctcaaaaaaaaaggattttgagtaataatagggtgagtggaggtgcccg 830
Query: 108 gtgtggagttcaaatgcatcagatcccttggagctggaattaaaggcagctgtgaaccac 167
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gtgtggagttcagatgcatcagatcccttggagctggaattaaaggcagctgtgaaccac 770
Query: 168 ctgacagatgcttggaacagagcttgggtcttctgcagaagcatcgtgaggtctaaccac 227
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 769 ctgacagatgcttggaacagagcttgggtcttctgcagaagcatcctgaggtctaaccac 710
Query: 228 caaaccggttccccagcccctgggttttagtgtgtccttagagcttaatttggaccctct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 caaaccggttccccagcccctgggttttagtgtgtccttagagcttaatttggaccctct 650
Query: 288 tcccctccctgttacacaggaagctgctttgaggagagaacaaaagaagttggagaagaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tcccctccctgttacacaggaagctgctttgaggagagaacaaaagaagttggagaagaa 590
Query: 348 gcaaatgaaaatgaaacaaatcaaagtgaaagccatgtacagccggttgcagaggttgtg 407
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 589 gcaaatgaaaatgaaacaaatcaaagtgaaagccatgtagagctggttgcagaggttgtg 530
Query: 408 tccttgctgccgttagctctccgtccaccggagacaggaaaagcacgagtctgcacctaa 467
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 529 tccttgctgccgttagctctccgtccaccggagacaggaaaagcaggagtctgcacctaa 470
Query: 468 cagtcac-atgtctctgctgact 489
||||||| | |||||||||||||
Sbjct: 469 cagtcacga-gtctctgctgact 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
