BAC Information

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BAC

Clone NameMSMg01-356E18
Chromosome11 (Build37)
Map Location 45,735,977 - 45,736,439
singlet/doubletsinglet
Overlap genenone
Upstream geneEbf1, LOC382510, LOC633082, Clint1
Downstream geneLsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356E18.T7 (MSMg01no356_e18.b1)MSMg01-356E18.TJ (MSMg01no356_e18.g1)
ACCAG466473AG466474
length751799
length of high quality
(start - end)		501 (37 - 537)336 (69 - 404)
definitionCHROMAT_FILE: MSMg01no356_e18.b1 PHD_FILE: MSMg01no356_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:59 2005CHROMAT_FILE: MSMg01no356_e18.g1 PHD_FILE: MSMg01no356_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATG
TCTATCTGCTGACACTGCTTCCTGCTCCTTCTGTTCCTCTGGCAGATATG
TCTATACACACATACACACACACACACACACACACACACACACACACACA
AAATGATGAAAATCTTCTGTGTCCAACTTCTGTGCCACATGTTGGGCCTT
TTGAGAAGCAAAAGGGATCCAGCAATCCACTTGGAGGTTGAAAGCTGAAC
AGTCATGTTGTCCCCTCCTTGAGAACTGAACGGTACTGAGGAGCCAGGTC
TCGTCTGCTACACTAGGGAGGGAACACCCAACTCCAATATCCAACAGTCA
TAGCTACAGGAATCCCAACTGTGTTTGGCTATACCACTAATACAGTGCTC
AAAGAACACAGAGCCAGGCGTGGGGACAGCCTGTCACTGTACTTCCTCTC
CACTCTGCCTATGGTTGGTTTAAGGTAGCTGTGTTTTGAGGAATTCTAGG
AAGCTTTTAGAAGCATTTTTTTCCCCTTTTTGGTGTGTGGGGGAGGAAAC
CTGGCTCTTTTCTGTGTCTTTGGATGACATCCCATGTAAAGGTGGTATTT
TTGAAAACGGCCCACCACTCTGAAAACACTATGTACAAGGTCAATTTTAC
AATCACAAATCATTATTACTACTCTGTCCATGTTAACCCCTCAATCGCTT
CCTCTCCAAACACCCATGAACCCGCCCCCCTCCATGTTTATAATACACAT
G

AGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAATGAAGGCTGGGGAGAAGTGTTTGAACAC
AGATGAAGTGTTTGCAAGGCAAGCACAAAGACCAGAGTTCAATCCCCAGA
GATACATACTTTTAAAAAGTCAGGTATGGTGGCGCACAGGTTTAATCTCA
CTCAATACTGGGGGTGTGGGAAGATTCCTGGGGTTCAATGGCCAAATACT
TTGGGAACTTCAGAACAATAAGATGTCCTGTGTCAAAAACAATTAAAAAT
TATAAAAGGTGAGTGGTCCTTGAATACCCAACCGCCAAGGTCATCCACTA
GCACCCACCCACCTCCCCCACACACAACTTGAGGTGAGGGGAGAAAAGAG
GGGAAGGAGCCACCCTTTTTCTTTTTTTCTCTTTCCCGTTTTTGTCCTTT
TTCCCCTCTTTCCCTCTTTCCGTTCTTTTTTCCTTCTTCTCCCCCCTTTT
TTTTTTCTTCTTGTTTCTCCTTTTTCCCTATCCCTTTTTTTTCATACTCT
GCTTTCATTCTCTTCCCTCGTTCTTCCTTCTTTTTTTTCCTCTTTCCCTT
TCCCTTTTTTCTCTTTTCTTTAATTTCTTGCTCCTTACTCTTTTACTATT
TTTTCAAACTCTATTTCATTACGCTTCTTTCTCTTTTTCCCTCATTATTG
TTTTCTTCCTTTTATCTATATCCCTGATCGTGCCCGTTAATTTCCCCTCT
ATTTTTCACCATTTTTCCCTCCGCATTTGTCGCGCTTCCTCTTTCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_e18.b1 MSMg01no356_e18.b1 CHROMAT_FILE:
MSMg01no356_e18.b1 PHD_FILE: MSMg01no356_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:59 2005
         (501 letters)



>mm_chr11_45735763_45736662
          Length = 900

 Score =  801 bits (414), Expect = 0.0
 Identities = 455/474 (95%), Gaps = 11/474 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgtctatctgctgacactgcttcctgctccttctgttcctctggcagatatg 64
           |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct: 215 gaattcaatgtctagctgctgacactgcttcctgctccctctgtccctctggcaggtatg 274

                                                                       
Query: 65  tctatacacacatacacacacacacacacacacacacacacacacacacaaaatgatgaa 124
           ||        |||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 275 tc--------catacacacacacacacacacacacacacacacacacacaa--tgatgaa 324

                                                                       
Query: 125 aatcttctgtgtccaacttctgtgccacatgttgggccttttgagaagcaaaagggatcc 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 aatcttctgtgtccaacttctgtgccacatgttgggccttctgagaagcaaaagggatcc 384

                                                                       
Query: 185 agcaatccacttggaggttgaaagctgaacagtcatgttgtcccctccttgagaactgaa 244
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agccctccacttggaggttgaaagctgaacagtcatgttgtcccctccttgagaactgaa 444

                                                                       
Query: 245 cggtactgaggagccaggtctcgtctgctacactagggagggaacacccaactccaatat 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 cggtactgaggagccaggtctcgtctgctaca-tagggagggaacacccaactccaatat 503

                                                                       
Query: 305 ccaacagtcatagctacaggaatcccaactgtgtttggctataccactaatacagtgctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaacagtcatagctacaggaatcccaactgtgtttggctataccactaatacagtgctc 563

                                                                       
Query: 365 aaagaacacagagccaggcgtggggacagcctgtcactgtacttcctctccactctgcct 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagagcacagagccaggcgtggggacagcctgtcactgtacttcctctccactctgcct 623

                                                                 
Query: 425 atggttggtttaaggtagctgtgttttgaggaattctaggaagcttttagaagc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atggttggtttaaggtagctgtgttttgaggaattctaggaagcttttagaagc 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 900
Length adjustment: 10
Effective length of query: 491
Effective length of database: 890
Effective search space:   436990
Effective search space used:   436990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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