BAC Information

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BAC

Clone NameMSMg01-356K09
Chromosome11 (Build37)
Map Location 72,789,843 - 72,987,541
singlet/doubletdoublet
Overlap geneAtp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119
Downstream geneTmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356K09.T7 (MSMg01no356_k09.b1)MSMg01-356K09.TJ (MSMg01no356_k09.g1)
ACCAG466739AG466740
length731792
length of high quality
(start - end)		496 (65 - 560)315 (71 - 385)
definitionCHROMAT_FILE: MSMg01no356_k09.b1 PHD_FILE: MSMg01no356_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:26 2005CHROMAT_FILE: MSMg01no356_k09.g1 PHD_FILE: MSMg01no356_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,789,843 - 72,790,337)(72,987,227 - 72,987,541)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACCAGATCCTGGCATAGGAGAGAGGCATGAGCAAGGTCTGCTGGCCTG
CGTCCTCTGACTAAATCCTAGCAGGATTTTACCGGTTCTGTGTTCCTTGA
CTCAAATAAAGATCCGAGCATGGTATGGGGAAGTGCCAGTGGCTGAGCAT
GCTGGGTAATGGATCCTGCTTGTTAGAAGACTGTCCCAGAACAGAGAGGA
CAAGAAGGAAGGGATGGCACGGAGTACCTCAGGGTGCTAGACTGGTCACT
GGCTTGAGAATGAGCTGCAATAAATCGGTCTCAGCTGGCTGATGGACCAG
GAAATGGACTGTCCTGATGGGGGAAAGGGCAGGTAGGGACTGGCTCTGAG
CAGAGAGTCATTCTCTGGGGTCATCTCTGGATGGGAGGAAACTATCTCAG
AGCAAGATGCGTGTTTCTTCCTTGAAGGTAGAGAAGTTTTTGTTCAGCCA
GGTTCTGGGCCCACTTTCTCCCTATGTCACTGGTGGAGAAATGAACCTTA
AACAATTAATAAGGGCTGCACAAAGAGGTGAACAAGTGCTCAGGTATCCT
GCTCAACCAGGGACCTCTCGCGTTGGCAGCGGTCTCAGGCACTGAAAAAT
GGGCCACTAATCCCTCATGAGTCCTGAATTAATGGACCCTGATATTCTGG
CGCCTCTGTGTTGAGCCGCATCTCTATGTCG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCAGATCCTGGAAGGTCAAAATAGGAAGG
AGCTCTTGGGCTAAGACTGTAGCCAATAAGCCAAGCAGTGCCCAGAAAGG
AATAAAAGTGTTTCCCCAAGTTTAGGAGTTCAAGTTCCTGACTCAGTTCT
TGAGTTAAAAGCCTGGTTTCACCTGTGGAAACTGTAATTCAGATCAGGAG
TTCAAGGCAAGTCTGGGCTACAGAAGACCCTGCCGGTTTTGTTGGGTTGG
TTTTTGTTGGGTTTTCTTATTTTGTTTTTAATATAAGCTATTTTCCATAC
AGTGGATGAGCTACCTTAATCAAGGTTATGCAGAAGGTAAGAAGTTGGGG
TGTGGGGTACCTTGGCAGAGTGTTCATCCCTGGGAGCAACTGGAGTAAGA
TCCCTGGTCTTTCTGAACCCCCAACATCCTATTTGGTTCATGATGCTTAG
TCTTCTGGTATATGCCACCTTTTCTCTAGTATACGTTTCCTTCTGGCATA
ACATCTGATAAGGTTTTCCCCGGTATTGGTTTGCTTTATCACAAAATTTT
TTCCGCATTCCCTTTGATAGGTTCCCCCATTTTTCTTCGTTTTTAACTTA
TTTTATTCTGGGTTCTTCTACCCCTTTATTTTATTCCTGATCTTTTCTTT
TTCTCCGTATTACCCTTTTCCCACCTTTTTTACCTATCCTTGTCTATGAT
AACTCTTTTTACTTCTCTCCCTACCCTTTTTCTTCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_k09.b1 MSMg01no356_k09.b1 CHROMAT_FILE:
MSMg01no356_k09.b1 PHD_FILE: MSMg01no356_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:26 2005
         (496 letters)



>mm_chr11_72789643_72790538
          Length = 896

 Score =  957 bits (495), Expect = 0.0
 Identities = 495/495 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataggagagaggcatgagcaaggtctgctggcctgcgtcctctgactaaatcctagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataggagagaggcatgagcaaggtctgctggcctgcgtcctctgactaaatcctagcag 260

                                                                       
Query: 61  gattttaccggttctgtgttccttgactcaaataaagatccgagcatggtatggggaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattttaccggttctgtgttccttgactcaaataaagatccgagcatggtatggggaagt 320

                                                                       
Query: 121 gccagtggctgagcatgctgggtaatggatcctgcttgttagaagactgtcccagaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccagtggctgagcatgctgggtaatggatcctgcttgttagaagactgtcccagaacag 380

                                                                       
Query: 181 agaggacaagaaggaagggatggcacggagtacctcagggtgctagactggtcactggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggacaagaaggaagggatggcacggagtacctcagggtgctagactggtcactggct 440

                                                                       
Query: 241 tgagaatgagctgcaataaatcggtctcagctggctgatggaccaggaaatggactgtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagaatgagctgcaataaatcggtctcagctggctgatggaccaggaaatggactgtcc 500

                                                                       
Query: 301 tgatgggggaaagggcaggtagggactggctctgagcagagagtcattctctggggtcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgggggaaagggcaggtagggactggctctgagcagagagtcattctctggggtcat 560

                                                                       
Query: 361 ctctggatgggaggaaactatctcagagcaagatgcgtgtttcttccttgaaggtagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctggatgggaggaaactatctcagagcaagatgcgtgtttcttccttgaaggtagaga 620

                                                                       
Query: 421 agtttttgttcagccaggttctgggcccactttctccctatgtcactggtggagaaatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttttgttcagccaggttctgggcccactttctccctatgtcactggtggagaaatga 680

                          
Query: 481 accttaaacaattaa 495
           |||||||||||||||
Sbjct: 681 accttaaacaattaa 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_k09.g1 MSMg01no356_k09.g1 CHROMAT_FILE:
MSMg01no356_k09.g1 PHD_FILE: MSMg01no356_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:26 2005
         (315 letters)



>mm_chr11_72987171_72987885
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagatcctggaaggtcaaaataggaaggagctcttgggctaagactgtagccaataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctcagatcctggaaggtcaaaataggaaggagctcttgggctaagactgtagccaataag 312

                                                                       
Query: 61  ccaagcagtgcccagaaaggaataaaagtgtttccccaagtttaggagttcaagttcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccaagcagtgcccagaaaggaataaaagtgtttccccaagtttaggagttcaagttcctg 252

                                                                       
Query: 121 actcagttcttgagttaaaagcctggtttcacctgtggaaactgtaattcagatcaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actcagttcttgagttaaaagcctggtttcacctgtggaaactgtaattcagatcaggag 192

                                                                       
Query: 181 ttcaaggcaagtctgggctacagaagaccctgccggttttgttgggttggtttttgttgg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 191 ttcaaggcaagtctgggctacagaagaccctgccggttttggtgggttggtttttgttgg 132

                                                                       
Query: 241 gttttcttattttgtttttaatataagctattttccatacagtggatgagctaccttaat 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 attttcttattttgtttttaatataagctattttccatacagtggatgagctaccttaat 72

                          
Query: 301 caaggttatgcagaa 315
           |||||||||||||||
Sbjct: 71  caaggttatgcagaa 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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