BAC Information

Click to search

BAC

Clone NameMSMg01-357B11
Chromosome11 (Build37)
Map Location 60,618,364 - 60,618,742
singlet/doubletsinglet
Overlap geneShmt1
Upstream geneFlcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8
Downstream geneLOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357B11.T7 (MSMg01no357_b11.b1)MSMg01-357B11.TJ (MSMg01no357_b11.g1)
ACCAG467077AG467078
length763756
length of high quality
(start - end)		510 (38 - 547)425 (73 - 497)
definitionCHROMAT_FILE: MSMg01no357_b11.b1 PHD_FILE: MSMg01no357_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:00 2005CHROMAT_FILE: MSMg01no357_b11.g1 PHD_FILE: MSMg01no357_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGGATCCGCGGA
ATTCAAGAGCTTCTTAGGTTAAAATAGTAGGATAGCAACACCTGTCTCAG
AAACAAAAGCATAGGCCAGGTGTAGTGACAGGTGTGATAGCACACATCTT
TAATCCCATCATCAGTCCAGAGGCTGCCCTGTGAGTCTGATCTATGTAGT
AAATTCTAGACCTGTCAGGACTACCCAGTGAAATACTATCAAAAATAAGG
ACTAGGTCAATAAATACATTATAAAAAATAAAACTCATCTTTATATTTTG
TTTTAAAATTGATTATATATATATATATATATACACGCACACACACACAC
ACACACACACACACACACACACACACATTTATCTGTATCTGTATTGAGTG
CTCTGTCTGCATGTACACCTATATGCTTGACGGTGGTGAAACCCCAAGGG
GTTGCTGGAAATTGAACTCAGGACCTCTAGAGGAGCAGTCAGCACTCTTT
CCACTGTGCCAACTCTCCATCCCCCATTCAATTCTTACCACAATTTCTAA
CACCACACTTAGGATTAGTCAAATCCTAATTCTACAAATGCCATGAGCAA
GCAGTATTCTCTCTGGGCTCACTGTCTTCCTCTGTAAATAACCATACCTT
TCTGCTGTCATCTTTGTTACATGCTTTTTATTCCCTCCCTGAGGTAGCCT
AAGCAGGCAAATTTCTTGATTTTATCCCAGCCCGGGTTTTCTAAAAAATC
TTATAAAATGGGT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAACAACCAAGACACATACTGAAACC
CTGTCTCAGCAAACAAATAAAAACAATGAAAACTAGTTGTGATATTAATT
TGCTGTGTTTTGCTATCTGAGGATGGCTTTGGACCTCTGATCATCCTGTC
TTCACTCCTAGGTGTTGAAATTATAGACTTGTACTAGCAGGTCCTGTTTG
TTTTATATATGTGAGTACACTGTAGCTGTCTTCAGACACAACAGAAGAGG
GCATCGGATCCCATTACAGATGGTTGTGAGTCACCATGTGGTTGCTGGGA
GCTGAATTCAGGACCTCTGGAGGAGTAGTCAGTGCTCCTAACTGCTTCTC
TCTAGCCTCTGTTGATTTTGTTTTAAATTTATTTATTTTTGTTGTTGCTG
TTTTTCTTTCTTTTTTTTTTTTACTGTATGTAATTATTTATTTTTAAAAA
TCAAGTCAAATAAATTATTATTTCAGGGATTTGATTCCTTTGCTGTCCTT
CCAGGTCCCCTGAAAGATAAAACCAAGAAAGATTAATGAGGCATTTATTT
GTCTCTGCAATTGTCTGGTTTCTTCTCTTAATAATCTATCTTCTATCTTA
ACCTTGTCTGATTCTTTCTGTTAAAAATTATCTTCTTTTTTCCTCTTGGT
GTTTGCTCTCTTCCTCTTTATTCTCCTATTTCCCTCGTCTCTTATTTTAC
TTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_b11.g1 MSMg01no357_b11.g1 CHROMAT_FILE:
MSMg01no357_b11.g1 PHD_FILE: MSMg01no357_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:00 2005
         (425 letters)



>mm_chr11_60618364_60619188
          Length = 825

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaacaaccaagacacatactgaaaccctgtctcagcaaacaaataaaaacaatgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagaacaaccaagacacatactgaaaccctgtctcagcaaacaaataaaaacaatgaaaa 320

                                                                       
Query: 61  ctagttgtgatattaatttgctgtgttttgctatctgaggatggctttggacctctgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctagttgtgatattaatttgctgtgttttgctatctgaggatggctttggacctctgatc 260

                                                                       
Query: 121 atcctgtcttcactcctaggtgttgaaattatagacttgtactagcaggtcctgtttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atcctgtcttcactcctaggtgttgaaattatagacttgtactagcaggtcctgtttgtt 200

                                                                       
Query: 181 ttatatatgtgagtacactgtagctgtcttcagacacaacagaagagggcatcggatccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttatatatgtgagtacactgtagctgtcttcagacacaacagaagagggcatcggatccc 140

                                                                       
Query: 241 attacagatggttgtgagtcaccatgtggttgctgggagctgaattcaggacctctggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 attacagatggttgtgagtcaccatgtggttgctgggagctgaattcaggacctctggag 80

                                                                       
Query: 301 gagtagtcagtgctcctaactgcttctctctagcctctgttgattttgttttaaatttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  gagtagtcagtgctcctaactgcttctctctagcctctgttgattttgttttaaatttat 20

                              
Query: 361 ttatttttgttgttgctgt 379
           |||||||||||||||||||
Sbjct: 19  ttatttttgttgttgctgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |