Query= MSMg01no357_d13.b1 MSMg01no357_d13.b1 CHROMAT_FILE:
MSMg01no357_d13.b1 PHD_FILE: MSMg01no357_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:09 2005
(610 letters)
>mm_chr11_72613194_72614207
Length = 1014
Score = 1129 bits (584), Expect = 0.0
Identities = 602/610 (98%), Gaps = 4/610 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagcccaacaccaagaactgataatttataagataattggatattactatttt 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattctcagcccaacaccaagaactgataatttataagataattggatgttactatttt 264
Query: 65 gtttgtgtaaaaatccctgtaagaatctagagctgtgtcacaggctgagtatgtgtgctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttgtgtaaaaatccctgtaagaatctagagctgtgtcacaggctgagtatgtgtgctc 324
Query: 125 tgagctcccaaagggtatgcttaaaagtcagtttcataatcctaccattcttttatctca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagctcccaaagggtatgcttaaaagtcagtttcataatcctaccattcttttatctca 384
Query: 185 ctctttataacatttccaaataggtggcatctgatgactgaccagtcaactctgtgaggc 244
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ctctttataacattttcaaataggtggcacctgatgactgaccagtcaactctgtgaggc 444
Query: 245 tgggaggcaaatgggtgacaacagccaccaaactgagtcagaaagtaaggaccaaactaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggaggcaaatgggtgacaacagccaccaaactgagtcagaaagtaaggaccaaactaa 504
Query: 305 gaattcagtatggctcagtgac----ataagataaattcattttggagctggccatggtg 360
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 gaattcagtatggctcagtgactcacataagataaattcattttggagctggccatggtg 564
Query: 361 gtagttcatacctgcaatacctgcacttggggaactgaaacaggtagtttactgcgattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtagttcatacctgcaatacctgcacttggggaactgaaacaggtagtttactgcgattt 624
Query: 421 tgaggccagcctgggttagagtgaaatcctaccttgaaagcttgtttggagattcgtgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaggccagcctgggttagagtgaaatcctaccttgaaagcttgtttggagattcgtgca 684
Query: 481 tgagttttcagtcactcctatactcttacctgaagaacagtcctcctctattggagaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgagttttcagtcactcctatactcttacctgaagaacagtcctcctctattggagaaaa 744
Query: 541 tggtactattgaccaagtgcacagcttctagagggacacacataaggccagccagttcaa 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 745 tggtactattgaccaagtgcacagcttcaagagggacacacataaggccagccagttcaa 804
Query: 601 ctgagtcaac 610
||||||||||
Sbjct: 805 ctgagtcaac 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1014
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1004
Effective search space: 602400
Effective search space used: 602400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_d13.g1 MSMg01no357_d13.g1 CHROMAT_FILE:
MSMg01no357_d13.g1 PHD_FILE: MSMg01no357_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:09 2005
(506 letters)
>mm_chr11_72806159_72807064
Length = 906
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Minus
Query: 221 tgacatgctaatcataaaatatgtgattaaacagttgagcgctgcttttaaactgctaac 280
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgacatgttaatcataaaatatgtgattaaacagttgagcgctgcttttaaactgctaac 647
Query: 281 agtggagcaataagcaggctgttccaatgaagcgcaggctcaccccacttctgccattgg 340
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 646 agtggagcaataagcaggctgttccaatgaagggcaggctcaccccacttctgccattgg 587
Query: 341 ggtgtgggtccagtcttgagattccaacttagtgtttttcaaagccccatctttgagtaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggtgtgggtccagtcttgagattccaacttagtgtttttcaaagccccatctttgagtaa 527
Query: 401 gagatggacttggctttgggatgggaccccagacttttaactctgctaattccaggtgga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gagatggacttggctttgggatgggaccccagacttttaactctgctaattccaggtgga 467
Query: 461 tgccctcccccttcaccccactcccccaccatagccacagaactag 506
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgccctcccccttcaccccactcccccaccatagccacagaactag 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
