BAC Information

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BAC

Clone NameMSMg01-357D16
Chromosome11 (Build37)
Map Location 101,454,231 - 101,454,682
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a
Downstream geneLOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357D16.T7 (MSMg01no357_d16.b1)MSMg01-357D16.TJ (MSMg01no357_d16.g1)
ACCAG467182AG467183
length818763
length of high quality
(start - end)		248 (68 - 315)452 (75 - 526)
definitionCHROMAT_FILE: MSMg01no357_d16.b1 PHD_FILE: MSMg01no357_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:10 2005CHROMAT_FILE: MSMg01no357_d16.g1 PHD_FILE: MSMg01no357_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGGGATTCTTCAGAGGGATGGGTGGGTTGTTGTTGTTGGTCATGGT
TTGTTAAATAGTCATACACAAAGAAGAAACAAGAAGGAATTAGATAGATA
TCCTGACTGCAAAGATCAAACTTGCATTGCCCTCTTTCCAACCCCTGACT
TTCTATTCAGGGATCTCTTTCCTTTCCTCTCTATGCCTTTCTCTCCTACC
TAGTGTTAAGGGGTTCAAAGGGTGGAAGAAAAGGCATGGAGAAGGGTAGA
AAAAAGAAGAACACTCAAAGTATCCAAAGACCAAGACCAGTCTCCATACA
CATGTTCACTCGTGTACACACACACACACACACCGCACAAAACCGAGGTC
TGAAACCTGGCAGCCCATGGTCATAGTCTCAGCACTCACGTGAGTGACAC
AGCCAGACTGTCTCTCTATCATACTACTTCATATATTTCTTCCTTAGACC
CTCTCACTCTTATAACAACGGATATTTTGCACTACCGTCATACTCCTCGC
GAAATTTTTTCCCCTCTTCCAAACACTCCTATTTACCCCCCTAGTAACTT
TCTATATAATTATACCATACTCCTCATTCCTCTTCCTTATCTCAATATTT
TTCTTACACTACACGCCTACTACTCTATAGCCTTTCCGTAACTTATAAGC
CACCTTTTGCCCCATTTGCCCTAATCCTTCCTTTTTTCTCTATTCATAAT
TCTTTCTCTCCTTTTATTCCCACTTTACTCATTCACTTCTCTAACCGCTT
CCCATATCCCTTTCCTTN

AAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAGAGAGATGTTGCAGCAATGGGC
TCAGGACACGTGGCCCTGGAAAGGAGACGAGCTTGCCTGCTAAAGTTCTC
AAGCTCCTTTCTTCCTAGGTTGTCATACCTTTCACTTAGCAGAGGGCCAG
GAGGTTCCCAGTCCAAGCTGGAAGAGGAAGCAGGGCTGGGGACCCTCAGT
ATTAGTCTCCAGGAAGACACAAATCCTATGAAGGCCTTTCTGCTCCAATT
CTGAGAAAGCCTCCCTTAGTCACATCAGTCACAATGATGTGGGGGAACCA
ATGGGTGATTTCGCATTAACACAGGGCATCAGCTCAGGGTCAGGAGCTTT
GCGTTGGGGTAGTCTAGGGATGATACCTGAATGGTTATCAGTGGGACAGT
GTGGAGACTGGCTTGGAACTAGAATAGTAATCAAATGTATCTAGGGATAC
AAAATGGGAGAGAGCAAGCCTTGTGGATAATCACTCAGACGCCCGAGAAG
TAGAACATGATTCTAAAGGCTTGGAAGCCCGTGTGCCTATTATAACAGAA
GAGGAGGTAGCCCGTTGGGAAAAGTTTTTTATCTTGGACGGACCAAGGGC
CTTATTTCTTTCTTCAAAACCATAAGTGGAAGGGTTGGTTTTCTATGGCA
TACTTAACAATGCTAAAATCTTCCCTAAAATACGGAGCCCCCTCGTTAAA
AATGCCCCCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_d16.g1 MSMg01no357_d16.g1 CHROMAT_FILE:
MSMg01no357_d16.g1 PHD_FILE: MSMg01no357_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:10 2005
         (452 letters)



>mm_chr11_101454031_101454882
          Length = 852

 Score =  866 bits (448), Expect = 0.0
 Identities = 451/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagagagatgttgcagcaatgggctcaggacacgtggccctggaaaggagacgagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agaagagagatgttgcagcaatgggctcaggacacgtggccctggaaaggagacgagctt 593

                                                                       
Query: 61  gcctgctaaagttctcaagctcctttcttcctaggttgtcatacctttcacttagcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gcctgctaaagttctcaagctcctttcttcctaggttgtcatacctttcacttagcagag 533

                                                                       
Query: 121 ggccaggaggttcccagtccaagctggaagaggaagcagggctggggaccctcagtatta 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 532 ggccaggaggttcccagtccaagctggaagaggaggcagggctggggaccctcagtatta 473

                                                                       
Query: 181 gtctccaggaagacacaaatcctatgaaggcctttctgctccaattctgagaaagcctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtctccaggaagacacaaatcctatgaaggcctttctgctccaattctgagaaagcctcc 413

                                                                       
Query: 241 cttagtcacatcagtcacaatgatgtgggggaaccaatgggtgatttcgcattaacacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cttagtcacatcagtcacaatgatgtgggggaaccaatgggtgatttcgcattaacacag 353

                                                                       
Query: 301 ggcatcagctcagggtcaggagctttgcgttggggtagtctagggatgatacctgaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggcatcagctcagggtcaggagctttgcgttggggtagtctagggatgatacctgaatgg 293

                                                                       
Query: 361 ttatcagtgggacagtgtggagactggcttggaactagaatagtaatcaaatgtatctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttatcagtgggacagtgtggagactggcttggaactagaatagtaatcaaatgtatctag 233

                                           
Query: 421 ggatacaaaatgggagagagcaagccttgtgg 452
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ggatacaaaatgggagagagcaagccttgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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