Query= MSMg01no357_l21.b1 MSMg01no357_l21.b1 CHROMAT_FILE:
MSMg01no357_l21.b1 PHD_FILE: MSMg01no357_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:49 2005
(298 letters)
>mm_chr11_114503686_114504383
Length = 698
Score = 474 bits (245), Expect = e-138
Identities = 274/293 (93%), Gaps = 16/293 (5%)
Strand = Plus / Minus
Query: 5 gaattcagtcgaggtatacagttcaatggagaaggactccccaagcatgcacgaagtcct 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaattcagtcgagg-atacagttcaatggagaaggactccccaagcatgcacgaagtcct 596
Query: 65 gggttcgatcctcagcactgaaaaaaaaaaaaaagaaattaaagtattgatctgccatga 124
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gggttcgatcctcagcactg--aaaaaaaaaaaagaaattaaagtattgatctgccatga 538
Query: 125 atcagaagcgaagactccactgtctgctacctgaggaagc-------------caaagaa 171
|||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 537 atcagaagcgaagactccactgtctgctacctgaggaagccaaagaagtatggcaaagaa 478
Query: 172 gtatggacacaggtcattgttcaagtgaggatgctgggccaggcaaggggaggggcagct 231
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtatggacacaggtcatcgttcaagtgaggatgctgggccaggcaaggggaggggcagct 418
Query: 232 taacctggtgctgtgggtgagtgggaggatgtctggnntctctccctactccc 284
|||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 417 taacctggtgctgtgggtgagtgggaggatgtctggggtctctccctactccc 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_l21.g1 MSMg01no357_l21.g1 CHROMAT_FILE:
MSMg01no357_l21.g1 PHD_FILE: MSMg01no357_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:49 2005
(434 letters)
>mm_chr11_114352938_114353773
Length = 836
Score = 712 bits (368), Expect = 0.0
Identities = 422/454 (92%), Gaps = 26/454 (5%)
Strand = Plus / Plus
Query: 4 cctccatgtagggaggcacaggcaagcacatctgcacacactcataggtacacacacgtg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cctccatgtagggaggcacaggcaagcacatctgcacacactcataggtacacacacgtg 245
Query: 64 cacataacaca-------------------atcacacacga--agagagagagaataaat 102
||||||||||| | ||||||||| |||||||||||||||||
Sbjct: 246 cacataacacacacacacacacacacacaca-cacacacgaagagagagagagaataaat 304
Query: 103 aatctgcagtttaatgagactcct--ggggggattttttttttaacatagctcaggtatg 160
||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 305 aatctacagtttaatgagactcctgggggggga--ttttttttaacatagctcagatatg 362
Query: 161 agagatactgtccagaccactcacatttggctgtctgtagcttcctcaggtaccaaaatg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agagatactgtccagaccactcacatttggctgtctgtagcttcctcaggtaccaaaatg 422
Query: 221 gagattctttgtagcatggcatagtgattgctattgattatcaacctgacagtttctaga 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gagattctttgtagcatggcatagtgattgctattgattatcaacctgacagtttctaga 482
Query: 281 atgatctaggagacaaagttctgaagaggtctgtgagagcatctctggctggaatctttg 340
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 483 atgatctaggagacaaagttctgaagatgtctgtgagagcatctctggctggaatctttg 542
Query: 341 aggaaggaagacccaccttgactgtgggtggctccatccacgggctgaagtaagcagaga 400
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 543 aggaaggaagacccaccttgactgtgggtggctctatccacgggctgaagtaagcagaga 602
Query: 401 cagtgagcagagcaccagcatttgtctcttgctc 434
||||||||||||||||||| ||||||||| ||||
Sbjct: 603 cagtgagcagagcaccagcgtttgtctctcgctc 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 836
Length adjustment: 9
Effective length of query: 425
Effective length of database: 827
Effective search space: 351475
Effective search space used: 351475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
