CTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCCTAATTAC
TCTGCCGTCAGTTCTACTCCTGACTTTATGGTGACAAAAATCAAACCGCG
GGCTCAGCTGTGGCTCTGTCTAATATAATAGCTGCCACTTGCTAATGCAG
TGAGCGGAGCTTACGGGGAGGTGTGCAGGTGGTAACACGTCCCGCTGTCC
TCTCAGTCTAGGGCAGCATCCCATTCCTGATGGACGTCAAGCGTCAGGGT
GGTTATTAATTACCAGGATGGTCAGCATGATGCAGAGGGTCCTGGGGAGC
CAGCCACATTCATAAAGTGCTCCGTTGATTGCTCAGCGCACATCTCAGGG
TCTCTTTCTAAGAACCAGTGGTAATTGCTTTTATTCCCTTAACATAACTG
TGAGGCTTTCGTAAAACAGAGAAATATAAATAAACCCATCTTTATCTCCT
AGATGTGATGCCAAAAATGCATATAGAAACTAAAGTGTTGAGAGGCAGGC
AATGTGTCATTCCACTAGTGCGTAACCTTCTCCGAGCGCTAAGTTTGTGG
TAGATAACTATATTAGCTGTTTGGGTCCAGCAAAGTTACGTTGTCTTTGC
GTTTCTATTTTCCCAGCCCCCCGTCTTATAACTATGTAATTACTCCGAAG
GCTCTTATATTCTCTCGGGTTCGTTCTCCTTCTTGTTTTCTATTTTATTC
ACTGTTTTGTTACCTCCCCCTTTCTCTGCTGTTTTTCACCCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCAGGCAAGCCATTTGCCTTCCCACAGCGGGCTGCTGTCAT
GTCACCTTTGATGGAGTGATAATAACCTCTTGTGTCTGGGAACAGCTTAT
GTTTTACAAAGTACTTTTAGTTATGCTGTCTGACTGATTTGCTCGGATCA
TCTACCACCTGTGTGGTGGGTGTTACCATTATTAGTAGGTCCACATTTTG
CTAATAAAGGTGCTGGAAGTAGAGGATTCATTCAGAGATGTAAAATGATA
TCTATCATATAATTGTATATAATCAGTGAGTATATTGTATTTACCTATTC
TGTGCTGAAGGCTTGGTTTTCTTGTATGTGAAATGTGGCAGAGTCCACTC
CTTAGACTTTGAAGTTTTTATGTGACAAGACCCTAAGCGCGCGCTTGATT
CTATAGATAGTATTGATCCTCTACACTACTAATGATTTTCTGATGCATAC
CTACCTATGTAATATATATAACCCTTCATTACCCTGCCTCCGCATTCACT
CTTTTTTGCCCTACCCATTTTTTATTATCGCTTGCTTTTCAATCCTTTCT
TTTTTTTTTGCCCTTTTTTCCCCTCCTCTTGACTTCCCTTTTATACCTTC
CCCTCTCTATTATTTTTTCTTTTCCCTATTCTCCCCTTCTTTTTCCTATT
CTTCCCCCCTCTTTTTATCCCTTCTTCCTACCCCTTTTTTTATTCTCTCC
TCG

Query= MSMg01no359_b02.b1 MSMg01no359_b02.b1 CHROMAT_FILE:
MSMg01no359_b02.b1 PHD_FILE: MSMg01no359_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:29 2005
         (489 letters)



>mm_chr11_36145585_36146473
          Length = 889

 Score =  938 bits (485), Expect = 0.0
 Identities = 485/485 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcctaattactctgccgtcagttctactcctgactttatggtgacaaaaatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcctaattactctgccgtcagttctactcctgactttatggtgacaaaaatc 264

                                                                       
Query: 65  aaaccgcgggctcagctgtggctctgtctaatataatagctgccacttgctaatgcagtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaccgcgggctcagctgtggctctgtctaatataatagctgccacttgctaatgcagtg 324

                                                                       
Query: 125 agcggagcttacggggaggtgtgcaggtggtaacacgtcccgctgtcctctcagtctagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcggagcttacggggaggtgtgcaggtggtaacacgtcccgctgtcctctcagtctagg 384

                                                                       
Query: 185 gcagcatcccattcctgatggacgtcaagcgtcagggtggttattaattaccaggatggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagcatcccattcctgatggacgtcaagcgtcagggtggttattaattaccaggatggt 444

                                                                       
Query: 245 cagcatgatgcagagggtcctggggagccagccacattcataaagtgctccgttgattgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagcatgatgcagagggtcctggggagccagccacattcataaagtgctccgttgattgc 504

                                                                       
Query: 305 tcagcgcacatctcagggtctctttctaagaaccagtggtaattgcttttattcccttaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcagcgcacatctcagggtctctttctaagaaccagtggtaattgcttttattcccttaa 564

                                                                       
Query: 365 cataactgtgaggctttcgtaaaacagagaaatataaataaacccatctttatctcctag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cataactgtgaggctttcgtaaaacagagaaatataaataaacccatctttatctcctag 624

                                                                       
Query: 425 atgtgatgccaaaaatgcatatagaaactaaagtgttgagaggcaggcaatgtgtcattc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtgatgccaaaaatgcatatagaaactaaagtgttgagaggcaggcaatgtgtcattc 684

                
Query: 485 cacta 489
           |||||
Sbjct: 685 cacta 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_b02.g1 MSMg01no359_b02.g1 CHROMAT_FILE:
MSMg01no359_b02.g1 PHD_FILE: MSMg01no359_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:29 2005
         (342 letters)



>mm_chr11_36307290_36308031
          Length = 742

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggcaagccatttgccttcccacagcgggctgctgtcatgtcacctttgatggagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tccaggcaagccatttgccttcccacagcgggctgctgtcatgtcacctttgatggagtg 483

                                                                       
Query: 61  ataataacctcttgtgtctgggaacagcttatgttttacaaagtacttttagttatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ataataacctcttgtgtctgggaacagcttatgttttacaaagtacttttagttatgctg 423

                                                                       
Query: 121 tctgactgatttgctcggatcatctaccacctgtgtggtgggtgttaccattattagtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctgactgatttgctcggatcatctaccacctgtgtggtgggtgttaccattattagtag 363

                                                                       
Query: 181 gtccacattttgctaataaaggtgctggaagtagaggattcattcagagatgtaaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtccacattttgctaataaaggtgctggaagtagaggattcattcagagatgtaaaatga 303

                                                                       
Query: 241 tatctatcatataattgtatataatcagtgagtatattgtatttacctattctgtgctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tatctatcatataattgtatataatcagtgagtatattgtatttacctattctgtgctga 243

                                                     
Query: 301 aggcttggttttcttgtatgtgaaatgtggcagagtccactc 342
           |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 242 aggcttggttttcttgtatgtgaaatgtggtagagtccactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)