Query= MSMg01no359_c20.b1 MSMg01no359_c20.b1 CHROMAT_FILE:
MSMg01no359_c20.b1 PHD_FILE: MSMg01no359_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:37 2005
(541 letters)
>mm_chr11_91495261_91496201
Length = 941
Score = 727 bits (376), Expect = 0.0
Identities = 427/444 (96%), Gaps = 4/444 (0%)
Strand = Plus / Minus
Query: 100 acagcagagggcttcctggtctgacctcagtggaagaagaggtgcctaacccttgagccc 159
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 acagcagaggactgcctggtctgacctcagtggaagaagaggtgcctaacccttgagccc 882
Query: 160 tggagagacctgaggccccagggaatgggg-aagcctggtgaggggagagcatcctcttg 218
|||||||||||||||||||||||| ||||| ||| ||||||| |||| |||||||||||
Sbjct: 881 tggagagacctgaggccccagggagtggggaaag-ctggtgacaggagggcatcctcttg 823
Query: 219 gagacattgggcaagaggaatgggataagaaactgttagatggtagacagagagggggac 278
||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 822 gagacatggggcaagagaaatgggataagaaactgttagatggtcgaccgagagggggac 763
Query: 279 aatgactggattgtaaaaaaaatagaattaataaaaattaaaaacataatagaaatactt 338
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aatgacgggattgtaaaaaaaatagaattaataaaaattaaaaacataatagaaatactt 703
Query: 339 tatagtataatgtcatttacattgtttttaaaaatggaagaaatatactaagatgaaata 398
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 702 tctagtataatgtcatttacattgtttttaaaaatggaagaaatatactaagataaaata 643
Query: 399 caaacctaaattaattcctaattatgcaaaagtcattggcaagt-aaatgaaataaattt 457
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 642 caaacctaaattaattcctaattatgcaaaagtcattggcaa-taaaatgaaataaattt 584
Query: 458 ttaatcatgggctctcacattgcaactttatatggagactctgtatggaaatatgataag 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttaatcatgggctctcacattgcaactttatatggagactctgtatggaaatatgataag 524
Query: 518 attctgagatttactcttacacag 541
||||||||||||||||||||||||
Sbjct: 523 attctgagatttactcttacacag 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_c20.g1 MSMg01no359_c20.g1 CHROMAT_FILE:
MSMg01no359_c20.g1 PHD_FILE: MSMg01no359_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:37 2005
(420 letters)
>mm_chr11_91379445_91380264
Length = 820
Score = 671 bits (347), Expect = 0.0
Identities = 403/427 (94%), Gaps = 13/427 (3%)
Strand = Plus / Plus
Query: 1 ctaaaacacatgtattggtatctggacgaatttcactgggttgtgcaaaaacaacaaaag 60
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct: 200 ctaaaacacatgtattggtgtcgggacgaatttcactgggttgtgcaaaaacaacagaag 259
Query: 61 aaatgaagaaatgatatatggatggagtgtctcatattttgcaaaagctatgatatatat 120
||||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||
Sbjct: 260 aaatgaagaaatg----atgtatggagtgcctcatattttgcaaaagctatgata-atat 314
Query: 121 atata--ta-----tatatatatatatatatcatcaacttccctatgaaaacaatgttta 173
||||| || || |||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 315 atataattagagtgtacatatatgtatatat-atcaacttccctataaaaacaatgttta 373
Query: 174 cattaacttccacaaaccagctgtgttaatattttttcactgatcttcagcttgcagtgt 233
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 374 cattaacttccacaaaccagctgtgttaatattttttcactgatctccagcttgcagtgt 433
Query: 234 tggaatttttagccagttatatttttaaaaatctccaagtatgtctttgagttgtttaag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tggaatttttagccagttatatttttaaaaatctccaagtatgtctttgagttgtttaag 493
Query: 294 cctaacaggcaagtataccaggatttaagatctctctgaggctttgttaccgtgttgaaa 353
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 494 cctaacaggcaagcataccaggatttaagatctctctgaggctttgttactgtgttgaaa 553
Query: 354 tagcagataagtgtgaataaccatgactgaatgcaggagtatctttccctcttttaggaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tagcagataagtgtgaataaccatgactgaatgcaggagtatctttccctcttttaggaa 613
Query: 414 agcttta 420
|||||||
Sbjct: 614 agcttta 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
