BAC Information

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BAC

Clone NameMSMg01-359P02
Chromosome11 (Build37)
Map Location 51,845,972 - 51,846,348
singlet/doubletsinglet
Overlap geneCdkl3
Upstream geneOlfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b
Downstream geneLOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359P02.T7 (MSMg01no359_p02.b1)MSMg01-359P02.TJ (MSMg01no359_p02.g1)
ACCAG469237AG469238
length756743
length of high quality
(start - end)
388 (31 - 418)376 (59 - 434)
definitionCHROMAT_FILE: MSMg01no359_p02.b1 PHD_FILE: MSMg01no359_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:33 2005CHROMAT_FILE: MSMg01no359_p02.g1 PHD_FILE: MSMg01no359_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAAATGCTG
TGTTCATGTTGATTTAGAGGTCCTTGTTTTCTTGTGCTCTCTATACCTTC
TGGCTCTCACGTTCTTTCTGTCTCCTCTTCTGTGGAGTTCCCTGAGCCCT
GAGGAAGGGCTTTTATAGACATCCATTTAGGGCTGAGTGTTTCACTCTAT
GTGTAATGCCAGCCTGTGGGTCTCTATATTTCCTCTCCTCTGCAGCAGGG
GGAAGCTTCTCTGATGATGGCTGAGCAAGGCACTGATCTATGAGCAGAGC
AGAATATCATTAGGAGTTATTTGATCACTACATTTTCTTTTCTTTTTAAG
ACCAGTATTATTTGCCCTAGGTCCACAGGTTACCAGGTCTCACACTTAGT
TATCCAAGTGGTGTCAGAAATGGGTTCCATCTTTAGAAATGGGCCTTAAG
TCAGGTCGGGTATTGGTTGCGACGATCCACCAGGTATCAGTTCTGTGCCA
CTATTGTTCTAGCGTATCTTTCAGGTGTGAGACTATGAGAAACTCAGGAC
CATCACTCCTTTTGAATGCGTGCGTCGTGCACGTATTATTGCCGTTCCAT
ATTTTCTGAGCCCCTCGCTCTCTTTTTATTTTTTTTTATTCGCTTACCTG
CTTTTCTTCGTCTTGTTTTACGCGCATTCTTCTTCTCGATAATCATATTT
TTCTCCCTCGTATTTGTTTCCCATCCTCATTCTCTTCGCTCTATTTTCTC
CCCCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCATTTCCCTGAACTGCCATTCACAGTGCAGGCGAAGGAGATG
AAAGGGATGGAAGGTATGTAGATGCTCGCTAAGGGGTGGGGCTGTTTGTG
AGGACACTTACCTGAGATCTTTGTAGAAGTAACCAGTTGCTTTGAAAAAG
TAGGCGAAATAAAGAGTTAGACTTGTTTTGTTTTGTTTTGTTTAGGCAGG
GTCTGTGTGTTTCCCGCTGTCCTGGAGCTCACTATATAAACCAGGCTGGC
CTGAACTCTCAGATATCTGCCTGCTTCCTCCTTCAGAGTGAGTGCTGGGA
CTAAAGGTCTACTGTGCCCAACAAGGGTCAGACTTAATAATGATAACTTC
ACAGAAAGGTAAAGACAACCAGAAATGGTAAATGTTCTGTTAGCTTAATG
TTGAGATGTCGGAGTAGAATTTGAGGAAGACAAACTTATATATTGTTCTT
TACATAATGTGCCGAAAGTGCTCTTCTGCTCAGCCTTCGGAAGCGTTTTA
GATGATTTGCCCCCTCCTTCTATTTCATACCCTTTCTTTCCCAACGTTTT
TTTTTTCATCCCCTTTTTACCCCTTCTTTTTCTTCCGTTAGGCCTTCCCG
CTCCTTTCTTTTTGTTTTTCCCCTGTTCCCGCCTTTATTTTTTTTTCTCC
CCCCCTTTTTTTCCTTTTCCTCCCCGCTTTTTTTACCCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_p02.g1 MSMg01no359_p02.g1 CHROMAT_FILE:
MSMg01no359_p02.g1 PHD_FILE: MSMg01no359_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:33 2005
         (376 letters)



>mm_chr11_51845772_51846548
          Length = 777

 Score =  669 bits (346), Expect = 0.0
 Identities = 370/378 (97%), Gaps = 3/378 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttccctgaactgccattcacagtgcaggcgaaggagatgaaagggatggaaggtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttccctgaactgccattcacagtgcaggcgaaggagatgaaagggatggaaggtatg 260

                                                                       
Query: 61  tagatgctcgctaaggggtggggctgtttgtgaggacacttacctg-agatctttgtaga 119
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 261 tagatgctcgctaaggggtggggctgtttgtgaggacacttaccgggagatctttgtaga 320

                                                                       
Query: 120 agtaaccagttgctttgaaaaagtaggcgaaataaagagttagacttgttttgttttgtt 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 agtaaccagttgctttgaaaaagtaggcgaaataaagagtcagacttgttttgttttgtt 380

                                                                       
Query: 180 ttgtttaggcagggtctgtgtgtttcccgctgtcctggagctcactatataaaccaggct 239
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtttaggcagggtctgtgtgtttccggctgtcctggagctcactatataaaccaggct 440

                                                                       
Query: 240 ggcctgaactctcagatatctgcctgcttcctccttcagagtgagtgctgggactaaagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcctgaactctcagatatctgcctgcttcctccttcagagtgagtgctgggactaaagg 500

                                                                       
Query: 300 tctactgtgcccaacaagggtcagacttaataatgataact-tcacagaaaggtaaagac 358
           ||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||
Sbjct: 501 tctactgtgcccaacaagggtcagacttaataatgataattgtaa-agaaaggtaaagac 559

                             
Query: 359 aaccagaaatggtaaatg 376
           ||||||||||||||||||
Sbjct: 560 aaccagaaatggtaaatg 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 777
Length adjustment: 9
Effective length of query: 367
Effective length of database: 768
Effective search space:   281856
Effective search space used:   281856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)