BAC Information

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BAC

Clone NameMSMg01-360A16
Chromosome11 (Build37)
Map Location 30,533,816 - 30,534,177
singlet/doubletsinglet
Overlap geneAcyp2
Upstream geneRtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, LOC654445, LOC666452
Downstream geneLOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360A16.T7 (MSMg01no360_a16.b1)MSMg01-360A16.TJ (MSMg01no360_a16.g1)
ACCAG469313AG469314
length745754
length of high quality
(start - end)		488 (47 - 534)403 (79 - 481)
definitionCHROMAT_FILE: MSMg01no360_a16.b1 PHD_FILE: MSMg01no360_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:41 2005CHROMAT_FILE: MSMg01no360_a16.g1 PHD_FILE: MSMg01no360_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTGTTGCCTAGACTGGACTTAAACTTGTCATCCTTCAGCCT
CTCAAGTAGCCAGAATTATAAGCCTATACCACCAGATGAACTGTGTTTTT
AAATAAACATTTTAGAATATGGTGAAAGTATAATTCAGCATCTCATTACA
TATTTTGGTTTTAAATATTTTTCCAAAAAACTTTATATATATATATATAT
TTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGA
ACTCACTCTGTAGACCAGGCTGGCCTTGAACCCAGAAATCCACCTGCCTC
TGCCTCTTGAGAGTGCTGGGATTAATTTTTAAGAAGACCCATTGAGTACA
TTCAGATACTGACTGTTTCATTCATTTTGCTACTTACCCTTTAATTGAGT
CAAGTAATGGCAGAAAATGCATAGTTTGTAAGAGGCAAACAAGCTGACAT
TTCTTTTTGTCCTTTCATACAGGTGTTTGCTTCAGAATGGCAAGTGAAAT
CTGTCTCTTATTTTTCTACCTTTTTTTTGCTAGTGATTTTAATCACAGAG
CCGGCTTCTTCCCAGTTCTAACCTACTTTTTGTATCATGCCTTTGATGAA
TGATATTTTTTTTGAAATACCTGATGTGATTACAAGTGCCTTTAAATTTT
ATTAAGCCCCCCCCGCATTTTTACTACTATTTTCTAATTATTTCN

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGTTTCCGCTACTCTGC
CTTTACTCTGCCATCAGTGACTAACCATCGGAAACTCTAATCCTAACTAA
ATGCTTTCTTGTCTAAGTTCATTTTTGTGTTCTGTCACAGCAATAGAAAG
ATAACTAATATAAGGAGCTAACTGACTACTTTCTAATTAGATTTAATCCC
CACTCCATGAATCAGAAGCCATACCTGGCACCATTAATGGGGCTAAGAAC
ATGTAACCAGATACATTAGAGGCCCTGGAGAACCTATTATTTTGCTAAGT
GGGCATAATATTAAAATGATTCCTAATGACTAACTGCTATACCTATAGAT
CTTTGCATCTCTCATAAGCTACCTCTTGCAATACCAGGCAGTTAACAGAG
ACCCACAATTGGCCTATGTGCTGTGAATCAGAGACTTCAAAATAATCAGT
TCTAAGTGGGACATCTGTACTGACGGCTCAGAGATTTGAAAGATTATCAA
CAACCCAAAGTGTTAGGTGACTACGAATGTTTCTTGGAAACCCCTGAAAA
GTTCACCCTTGAACTCCCAGGATTCCGAAAGTTGGTCAAAACTGGGCAAA
TCTACCAAAAATCCCCCCTGGAAGGGGTATATGTGCCCAAACCCCCCCTT
CCCACTGGCTTTGTGAAATAAAATCGCTAAGTCCAAAATGGTTTTGTTTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_a16.b1 MSMg01no360_a16.b1 CHROMAT_FILE:
MSMg01no360_a16.b1 PHD_FILE: MSMg01no360_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:41 2005
         (488 letters)



>mm_chr11_30533816_30534703
          Length = 888

 Score =  677 bits (350), Expect = 0.0
 Identities = 358/362 (98%), Gaps = 3/362 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtgttgcctagactggacttaaacttgtcatccttcagcctctcaagtagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaattctctgtgttgcctagactggacttaaacttgtcatccttcagcctctcaagtagc 303

                                                                       
Query: 65  cagaattataagcctataccaccagatgaactgtgtttttaaataaacattttagaatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagaattataagcctataccaccagatgaactgtgtttttaaataaacattttagaatat 243

                                                                       
Query: 125 ggtgaaagtataattcagcatctcattacatattttggttttaaatatttttccaaaaaa 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 242 ggtgaaagtataattcagcatctcattacatactttggttttaaatatttttccaaaaaa 183

                                                                       
Query: 185 ctttatatatatatatatat---ttttttttttttgagacagggtttctctgtgtagccc 241
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctttatatatatatatatatatattttttttttttgagacagggtttctctgtgtagccc 123

                                                                       
Query: 242 tggctgtcctggaactcactctgtagaccaggctggccttgaacccagaaatccacctgc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tggctgtcctggaactcactctgtagaccaggctggccttgaacccagaaatccacctgc 63

                                                                       
Query: 302 ctctgcctcttgagagtgctgggattaatttttaagaagacccattgagtacattcagat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  ctctgcctcttgagagtgctgggattaatttttaagaagacccattgagtacattcagat 3

             
Query: 362 ac 363
           ||
Sbjct: 2   ac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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