BAC Information

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BAC

Clone NameMSMg01-360H14
Chromosome11 (Build37)
Map Location 42,712,238 - 42,712,710
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg2, Gabra1, Gabra6, Gabrb2
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360H14.T7 (MSMg01no360_h14.b1)MSMg01-360H14.TJ (MSMg01no360_h14.g1)
ACCAG469640AG469641
length767778
length of high quality
(start - end)		473 (70 - 542)485 (73 - 557)
definitionCHROMAT_FILE: MSMg01no360_h14.b1 PHD_FILE: MSMg01no360_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:14 2005CHROMAT_FILE: MSMg01no360_h14.g1 PHD_FILE: MSMg01no360_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATGTATACCAATTAAAATTGTTCTACTTGGCAAAGTTCTCTGT
TGGCTGTCTCCTTATTGTTTAAACTGTCAAATAACAAATTTCCTTTCAAG
TTTGAAAATACTAAATTTCAGCCTGGGCAATTATATTTTGAATTTTGGTC
TACTTTTATTGTTGTGGTTTTGATACTCAATGCAAGACACTAATTCAAAA
CAATGACCTTCTGTGACATCTATGTGTCACCAGGCTGTGACATAGGATGT
GGGATCTAAGGAAATGTATGATTTCTTATATTCAAGAAACTACTTAGGAA
GACAATACACATGTAAGCATTTAATCTCCTCCATGCATGCAAACATAGTC
ATCAAATAACTAAATAAGAATGTAAAATTTAAGTGGCAAAATTTTATCCA
ATATAATTACATGGCAAGAATAAGAGAAATGTGCACAGAAAATTAACACT
TGATCAAGGAAATTTGAGGAAACAAGATGAGCTTCTGGGGACTGTGAAGA
CTGTATGGAAATGTATGTATAGCCTCACATGTGATTTTTTTCTTCCTTTT
TTAAATTTTAATCTTTAACCTTTTTTTTTTACAGCCCAAACATTATCCCC
CCTCCATGTCTAAACTCCAAATTCTTCACATTCCACACCTTCCTCCCCCA
ACCCTTATTTTCCAGAGGAAAGCCCCCCCATTGGTTCCCCCTAAACCCCC
CCCCCCCTTGGGGCCCN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAAAGGCTGAACAGAAAAGCGCAGCTGG
AGAGCTGTCAATCACCTAAGTAACAGGCAAGGAGAAGTGATAGGGGGTAA
GTGCCATTCAATCCCAGAGGAGGGCAGGGGAGATAGCTCTTTCTGTACAG
TTCTTGTTATGGAAACAGAAAAAACTGAGCCCAATAGCCACAAGCAAGAG
AACAATGAGTGTGCCCTTGTGGTTCCAGGCCTGGAGAGGTGGAGCCAGGA
GGATCTTTGGGGCTTACTGATCAGCCAGTCTAGCCTACTGGGTGAGTGCT
GGAGCTAAGGAGAGTCCTTGTCTCAAAGCAAAGCAAAATAAAAATAAAAA
ACTCGGTGCACAGTGCTTGAGGAAGGACAGTAGAGGTTGACCATTGGCTA
CGACATGCACATGCACCCACATGCATATACATGTATGCATACACATATAG
AAAGTAAAGTCCATAGAACCTGAGGAAGGTAGTGAAGTGAACATGTATGA
TTGGCTGGGTTATAAATTCTCTCCTTCCTTCCTCACCTCCCACTTGTATT
ACTCTTCCTCAGCATTTCCCTCTTTGGCCTTTCTCAATCTCACCTTCCTC
CCCTGTTCCCTTTAAAAGGGTTTTCTTCTTCCCCTGGTGGTAAATAAATG
GGCCTATTGCAGGGCAGAATATTTCTGAATCTCCATTTAACGCGTATTTG
ATGGTTCCTTTTTGTATTTCTTTTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_h14.b1 MSMg01no360_h14.b1 CHROMAT_FILE:
MSMg01no360_h14.b1 PHD_FILE: MSMg01no360_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:14 2005
         (473 letters)



>mm_chr11_42712038_42712910
          Length = 873

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaattgttctacttggcaaagttctctgttggctgtctccttattgtttaaactgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaattgttctacttggcaaagttctctgttggctgtctccttattgtttaaactgtca 260

                                                                       
Query: 61  aataacaaatttcctttcaagtttgaaaatactaaatttcagcctgggcaattatatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataacaaatttcctttcaagtttgaaaatactaaatttcagcctgggcaattatatttt 320

                                                                       
Query: 121 gaattttggtctacttttattgttgtggttttgatactcaatgcaagacactaattcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattttggtctacttttattgttgtggttttgatactcaatgcaagacactaattcaaa 380

                                                                       
Query: 181 acaatgaccttctgtgacatctatgtgtcaccaggctgtgacataggatgtgggatctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaatgaccttctgtgacatctatgtgtcaccaggctgtgacataggatgtgggatctaa 440

                                                                       
Query: 241 ggaaatgtatgatttcttatattcaagaaactacttaggaagacaatacacatgtaagca 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaatgtatgaaatcttatattcaagaaactacttaggaagacaatacacatgtaagca 500

                                                                       
Query: 301 tttaatctcctccatgcatgcaaacatagtcatcaaataactaaataagaatgtaaaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaatctcctccatgcatgcaaacatagtcatcaaataactaaataagaatgtaaaatt 560

                                                                       
Query: 361 taagtggcaaaattttatccaatataattacatggcaagaataagagaaatgtgcacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagtggcaaaattttatccaatataattacatggcaagaataagagaaatgtgcacaga 620

                                                                
Query: 421 aaattaacacttgatcaaggaaatttgaggaaacaagatgagcttctggggac 473
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 aaattaacacttgatcagggaaatttgaggaaacaagatgagcttctggggac 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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