Query= MSMg01no360_i01.b1 MSMg01no360_i01.b1 CHROMAT_FILE:
MSMg01no360_i01.b1 PHD_FILE: MSMg01no360_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:16 2005
(572 letters)
>mm_chr11_104453205_104454178
Length = 974
Score = 826 bits (427), Expect = 0.0
Identities = 452/461 (98%), Gaps = 4/461 (0%)
Strand = Plus / Minus
Query: 7 gaattcctgtttctgtcgcac-aggaatgagtggtactcggcagggaaattctagctatg 65
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaattcctgtttctg-cgcacaaggaatgagtggtactcggcagggaaattctagctatg 402
Query: 66 tagtttgcaaacaattaaataaggaaacaggtgagactgacggggctgaaggaagagttc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tagtttgcaaacaattaaataaggaaacaggtgagactgacggggctgaaggaagagttc 342
Query: 126 cacagcattttctcatacgtcaggatggggaaagctaagtg--ctccttacagacctcaa 183
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 341 cacagcattttctcatacgtcaggacggggaaagctaagtgctctccttacagacctcaa 282
Query: 184 gttatgacaaggagctggcaaagaaaaccttagaacacctgagttcaaagtgggattgaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gttatgacaaggagctggcaaagaaaaccttagaacacctgagttcaaagtgggattgaa 222
Query: 244 acacaatcttaaagtctgggggttagctcgggtagtaaagagcctgccacacaagggtga 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 221 acacaatcttaaagtctgggggttagctcgggtagtaaagagcctgccacacaagggtaa 162
Query: 304 ggatctgaattcggatcctcagaccccacataaaaattggcataggctggtcaatgcctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ggatctgaattcggatcctcagaccccacataaaaattggcataggctggtcaatgcctg 102
Query: 364 taaccacaggactggggtgggggaaggggaacagatacagaaacaagtagattcctgaag 423
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 101 taaccacaggactggggtgggggaagaggagcagatacagaaacaagtagattcctgaag 42
Query: 424 ctcgttgggcagccagcattgtcaaataaatgagcttccag 464
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 41 ctcgttgggcagccagccttgtcaaataaatgagcttccag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 974
Length adjustment: 10
Effective length of query: 562
Effective length of database: 964
Effective search space: 541768
Effective search space used: 541768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_i01.g1 MSMg01no360_i01.g1 CHROMAT_FILE:
MSMg01no360_i01.g1 PHD_FILE: MSMg01no360_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:16 2005
(594 letters)
>mm_chr11_104280159_104281148
Length = 990
Score = 1106 bits (572), Expect = 0.0
Identities = 586/594 (98%), Gaps = 7/594 (1%)
Strand = Plus / Plus
Query: 1 cagaacagccataactacgtggagaaaccctgctgcagaaataaaaacaacaaaaggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cagaacagccataactacgtggagaaaccctgctgcagaaataaaaacaacaaaaggtga 263
Query: 61 ggggagctggagagagagctcagcagttaaaacagtggtcactgctgctgcaagttcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggggagctggagagagagctcagcagttaaaacagtggtcactgctgctgcaagttcagt 323
Query: 121 ctccagcaccacaccaggctgctcctaaccgcctgcaactccagatcgggggagccaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctccagcaccacaccaggctgctcctaaccgcctgcaactccagatcgggggagccaata 383
Query: 181 ctttgttcttttctctgcaagcattgtattcatacccacacacatacaattttaaagtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttgttcttttctctgcaagcattgtattcatacccacacacatacaattttaaagtat 443
Query: 241 taatatatgtacttattaatagatatattaagaccaaaagaaaacagttttattattttg 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 taatatatgtacttattaatagatatattaagaccaaaagaaaacggttttattattttg 503
Query: 301 ctttttgctttttttttttttttttgagaagaaaaatgattgttttcatcagggattttc 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttttgctttttttttttttt---gagaagaaaaatgattgttttcatcagggattttc 560
Query: 361 cccccaaatcttatcactctaacaagcaacttcactagtgttttcatctggtaataatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccccaaatcttatcactctaacaagcaacttcactagtgttttcatctggtaataatct 620
Query: 421 ttctttattcttactgtgccccactatccttgtccactcaaaaagcataattttactcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctttattcttactgtgccccactatccttgtccactcaaaaagcataattttactcag 680
Query: 481 aaattttatttctgcaggtgaactcacacccacacaaaacagttactataaacacacata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaattttatttctgcaggtgaactcacacccacacaaaacagttactataaacacaca-- 738
Query: 541 cagagcactaagcttgctgcctcgtgagaaaaacaaaaagcttaactccagccc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 --gagcactaagcttgctgcctcgtgagaaaaacaaaaagcttaactccagccc 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 990
Length adjustment: 10
Effective length of query: 584
Effective length of database: 980
Effective search space: 572320
Effective search space used: 572320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
