Query= MSMg01no360_i03.b1 MSMg01no360_i03.b1 CHROMAT_FILE:
MSMg01no360_i03.b1 PHD_FILE: MSMg01no360_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:16 2005
(612 letters)
>mm_chr11_43733218_43734230
Length = 1013
Score = 1156 bits (598), Expect = 0.0
Identities = 607/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacgattggtcccaaatcgcagagttcctaattaggagagcaatgactcaaata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacgattggtcccaaatcgcagagttcctaattaggagagcaatgactcaaata 263
Query: 64 cagactttctgtctccaagtgacatatcccaactctgactcagacaaagtgatttgaaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagactttctgtctccaagtgacatatcccaactctgactcagacaaagtgatttgaaat 323
Query: 124 tctttaccttcctcctctcccagtctgaccccgacttcatcagcctcagcttgctcatct 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctaccttcctcctctcccagtctgaccccgacttcatcagcctcagcttgctcatct 383
Query: 184 gaggctgagcatttctgctatagagcctgggtatcattccttagaggacagacggcatga 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 gaggctgagcatttctgctatagagcctgggtatcattccttagaggacagacggcgtga 443
Query: 244 catctatatgagccttcaagtctgtccttccactgtgtcattaggtcactgacatttact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catctatatgagccttcaagtctgtccttccactgtgtcattaggtcactgacatttact 503
Query: 304 gtctactgtgtacttgacactgagtttaagcctagactaaaaggagggatgagcattcac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtctactgtgtacttgacactgagtttaagcctagactaaaaggagggatgagcattcac 563
Query: 364 atggcttactcatcgggctggggaagcttgcttgatttcctctcttctttgttgttggct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggcttactcatcgggctggggaagcttgcttgatttcctctcttctttgttgttggct 623
Query: 424 tcttctcctttttttagtcttaaaatcttatttgtcctacctcaaagaaaaaaaaaa-ca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 624 tcttctcctttttttagtcttaaaatcttatttgtcctacctcaaagaaaaaaaaaaaca 683
Query: 483 aagacaaaatctgaaacaaacaaaacacactctcaagcagagaggaggacttgggtggac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagacaaaatctgaaacaaacaaaacacactctcaagcagagaggaggacttgggtggac 743
Query: 543 aaagtcagatctacagctattgggaggaacagactggagtgtcaagtgtggagtcaaagc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaagtcagatctacagctattgggaggaacagactggagtgtcaagtgtggagtcaaagc 803
Query: 603 acaggcttgg 612
||||||||||
Sbjct: 804 acaggcttgg 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_i03.g1 MSMg01no360_i03.g1 CHROMAT_FILE:
MSMg01no360_i03.g1 PHD_FILE: MSMg01no360_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:16 2005
(580 letters)
>mm_chr11_43872497_43873476
Length = 980
Score = 891 bits (461), Expect = 0.0
Identities = 461/461 (100%)
Strand = Plus / Minus
Query: 1 tacatttatgtgtgtgatcatttaatggtgtcttgtctttccccgtgatggtaatatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tacatttatgtgtgtgatcatttaatggtgtcttgtctttccccgtgatggtaatatcct 402
Query: 61 tgaagctagcgtctgcttctcattcccatggtatctgcagcacccagagcacttgacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgaagctagcgtctgcttctcattcccatggtatctgcagcacccagagcacttgacaac 342
Query: 121 acttaggaaaaatgactaagtaggtaccaaagaaatcaagctgtgggataaacccaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acttaggaaaaatgactaagtaggtaccaaagaaatcaagctgtgggataaacccaaagt 282
Query: 181 ctaattaatagtagagcagaggctagaatcaggccgcttaccttcttataccattcttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctaattaatagtagagcagaggctagaatcaggccgcttaccttcttataccattcttac 222
Query: 241 tacagatagaagtagtcagcccagaaagcctgggctgtcatctttactcccccattcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tacagatagaagtagtcagcccagaaagcctgggctgtcatctttactcccccattcatt 162
Query: 301 tgccttataaacttggccaactaacatgaccatctttatcctcattttcttcttatgcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tgccttataaacttggccaactaacatgaccatctttatcctcattttcttcttatgcaa 102
Query: 361 agtggaatactcctgtcattcatataatgagtatcattctaggactacccttgtcctact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 agtggaatactcctgtcattcatataatgagtatcattctaggactacccttgtcctact 42
Query: 421 tgggttcctattgctatagtaaatacggggaccaaaagaaa 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 tgggttcctattgctatagtaaatacggggaccaaaagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
