BAC Information

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BAC

Clone NameMSMg01-360I04
Chromosome11 (Build37)
Map Location 101,846,804 - 101,847,354
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3
Downstream gene1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360I04.T7 (MSMg01no360_i04.b1)MSMg01-360I04.TJ (MSMg01no360_i04.g1)
ACCAG469667AG469668
length744773
length of high quality
(start - end)		548 (65 - 612)464 (76 - 539)
definitionCHROMAT_FILE: MSMg01no360_i04.b1 PHD_FILE: MSMg01no360_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:16 2005CHROMAT_FILE: MSMg01no360_i04.g1 PHD_FILE: MSMg01no360_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACACCTTACCTGTGACAGTCAAAACACAGGCGCACTAAAAATTACT
GTACAAAACTGTATTCAGGATATATTTATATGTGACGCATTAATGGATTT
CATGTTTAGACTTGGATCCACTCACTACATATAGTATATATATTATATCG
TAAAGTCTCAAACATTTCTGTCCCAAGCACTTCAGTAAAGAATATGCAAC
ATCTAACTCCTAAGAATTGCTGGAGGGCTGGCAAGATGGCTCAGAGGGTT
AAGAGCACTGACTGCTCTTCCTAAGGTCCTGGGTTCAAATCCCAGCAACC
ACATGGTGGCTCACAACCACCCGTAATGAGATCTGACGCCCTCTTCTGGT
GCGTCTGAAGACAGCTATAGTGTACTTATGTATAATAATAAATCTTTGGG
CCAGAGCGAGTGGAGTTGACCTAAGTGAGCGGGTCATCTGTACAGCTATA
GTGTACTCACATACTTAAAGTAAATCTTTTTTTTANAAAATTTGCTGGAA
AGATTCCAGAAACATTCAAGGAGTTGCGGAGGTTCCTGGGCTGGCAAGGT
GCCCAGCATGCACAAAAACCTTAGTTCAGTTCCCAGCGCGGAACATACAG
GCGTAGCGGTTGCAGAAGCAATTGACAGATGCTGAGCACTCCCTGTGAGT
CTGCGCCCTGGGCTGTGGGTTCTGGGCTAGGGTGGGGGCAATTN

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGGAGACCAGGCTAGCCTGGA
ACTTGGAGATTCATCTGCCTGTTTCCGAGTGCTGAGATTAATGGTGCGTG
CCACCACACCCAGCATTCATCCCGGGTTTTTTTTTTTTTTTTAAAGATTT
ATTTATTTTTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACC
AGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGT
TGCCGGGATATGAACTCAGGACCTTCAGAAGAGCAGTTACCTGTTGAGCC
ATCTCACCAGCCCCCTCATCCCGGTTTTTGAGGCAGCATCTCACTCTGTA
ATCTAGCCTGCTCTCAAACTCCCGTTTCCCCACCCCCACTTCCTGGATGC
CGAGGTTACAGGCATGTCTCTATGACCCACTTAGTGTATGTTTTTGATTT
CTCCCTCCATCCCTCTTATGGCCCATTTTTTTTTTCCCTCTCTGCCTGTT
TGGGGAGCTAGGCCCTTCGAAAAAAATCTTTTGCAAAGGTTACTTGGAGT
GACCAACCGAACGCCTTATTTTCCTTTTACGGTAATTGGGAAACTTTCCA
TTTTGGCCACCTACTTTGCCTCCTAACCCACTTACCCAACTCCTATCCTC
ATATTACGTTTTGCCATCATTCCCTTTTTTTGTGTCGCATCTTACCCCCT
TCGGGTACCTTCCCTTTATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_i04.b1 MSMg01no360_i04.b1 CHROMAT_FILE:
MSMg01no360_i04.b1 PHD_FILE: MSMg01no360_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:16 2005
         (548 letters)



>mm_chr11_101846604_101847554
          Length = 951

 Score = 1017 bits (526), Expect = 0.0
 Identities = 544/552 (98%), Gaps = 5/552 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgacagtcaaaacacaggcgcactaaaaattactgtacaaaactgtattcaggatata 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgacagtcaaaacacaggcacactaaaaattactgtacaaaactgtattcaggatata 260

                                                                       
Query: 61  tttatatgtgacgcattaatggatttcatgtttagacttggatccactcactacatatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatatgtgacgcattaatggatttcatgtttagacttggatccactcactacatatag 320

                                                                       
Query: 121 tatatatattatatcgtaaagtctcaaacatttctgtcccaagcacttcagtaaagaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatatattatatcgtaaagtctcaaacatttctgtcccaagcacttcagtaaagaata 380

                                                                       
Query: 181 tgcaacatctaactcctaagaattgctggagggctggcaagatggctcagagggttaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaacatctaactcctaagaattgctggagggctggcaagatggctcagagggttaaga 440

                                                                       
Query: 241 gcactgactgctcttcctaaggtcctgggttcaaatcccagcaaccacatggtggctcac 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcactgactgctcttccgaaggtcctgggttcaaatcccagcaaccacatggtggctcac 500

                                                                       
Query: 301 aaccacccgtaatgagatctgacgccctcttctggtgcgtctgaagacagctatagtgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccacccgtaatgagatctgacgccctcttctggtgcgtctgaagacagctatagtgta 560

                                                                       
Query: 361 cttatgtataataataaatctttgggccagagcgagtggagttgacctaagtgagcgggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttatgtataataataaatctttgggccagagcgagtggagttgacctaagtgagcgggt 620

                                                                       
Query: 421 catctgtacagctatagtgtactcacatacttaaagtaaat----cttttttttanaaaa 476
           |||||||||||||||||||||||||||||||||||||||||    |||||||||| ||||
Sbjct: 621 catctgtacagctatagtgtactcacatacttaaagtaaataaatctttttttta-aaaa 679

                                                                       
Query: 477 tttgctggaaagattccagaaacattcaaggagttgcggaggttcctgggctggcaaggt 536
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 tttgctggaaagattccagaaacattcaaggggttgcggaggttcctgggctggcaaggt 739

                       
Query: 537 gcccagcatgca 548
           ||||||||||||
Sbjct: 740 gcccagcatgca 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 951
Length adjustment: 10
Effective length of query: 538
Effective length of database: 941
Effective search space:   506258
Effective search space used:   506258
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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